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Update vignettes, addressing issue #16

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HannahVMeyer committed Sep 25, 2019
1 parent fc7a38b commit 09dcd59e77178b35747aae81a5c1988712e20de9
Showing with 1,077 additions and 635 deletions.
  1. +27 −16 docs/404.html
  2. +27 −16 docs/LICENSE-text.html
  3. +28 −17 docs/articles/AncestryCheck.html
  4. +28 −17 docs/articles/Genomes1000.html
  5. +28 −17 docs/articles/HapMap.html
  6. BIN docs/articles/checkAncestry.png
  7. BIN docs/articles/checkHetImiss.png
  8. BIN docs/articles/checkRelatedness.png
  9. BIN docs/articles/checkSex.png
  10. BIN docs/articles/hwe.png
  11. +27 −16 docs/articles/index.html
  12. BIN docs/articles/individualQC.png
  13. BIN docs/articles/maf.png
  14. BIN docs/articles/markerQC.png
  15. BIN docs/articles/overviewQC.png
  16. +31 −18 docs/articles/plinkQC.html
  17. BIN docs/articles/snpmissingness.png
  18. +27 −16 docs/authors.html
  19. +27 −16 docs/index.html
  20. +28 −16 docs/news/index.html
  21. +27 −16 docs/reference/checkPlink.html
  22. +27 −16 docs/reference/check_ancestry.html
  23. +27 −16 docs/reference/check_het_and_miss.html
  24. +27 −16 docs/reference/check_hwe.html
  25. +27 −16 docs/reference/check_maf.html
  26. +27 −16 docs/reference/check_relatedness.html
  27. +27 −16 docs/reference/check_sex.html
  28. +27 −16 docs/reference/check_snp_missingness.html
  29. +27 −16 docs/reference/cleanData.html
  30. +27 −16 docs/reference/evaluate_check_ancestry.html
  31. +27 −16 docs/reference/evaluate_check_het_and_miss.html
  32. +27 −16 docs/reference/evaluate_check_relatedness.html
  33. +27 −16 docs/reference/evaluate_check_sex.html
  34. +116 −69 docs/reference/index.html
  35. +27 −16 docs/reference/overviewPerIndividualQC.html
  36. +27 −16 docs/reference/overviewPerMarkerQC.html
  37. +27 −16 docs/reference/perIndividualQC.html
  38. +27 −16 docs/reference/perMarkerQC.html
  39. +27 −16 docs/reference/plinkQC.html
  40. +27 −16 docs/reference/relatednessFilter.html
  41. +27 −16 docs/reference/run_check_ancestry.html
  42. +27 −16 docs/reference/run_check_heterozygosity.html
  43. +27 −16 docs/reference/run_check_missingness.html
  44. +27 −16 docs/reference/run_check_relatedness.html
  45. +27 −16 docs/reference/run_check_sex.html
  46. +27 −16 docs/reference/testNumerics.html
  47. BIN vignettes/checkAncestry.png
  48. BIN vignettes/checkHetImiss.png
  49. BIN vignettes/checkRelatedness.png
  50. BIN vignettes/checkSex.png
  51. BIN vignettes/hwe.png
  52. BIN vignettes/individualQC.pdf
  53. BIN vignettes/individualQC.png
  54. BIN vignettes/maf.png
  55. BIN vignettes/markerQC.png
  56. BIN vignettes/overviewQC.png
  57. BIN vignettes/{ → pdf}/checkAncestry.pdf
  58. BIN vignettes/{ → pdf}/checkHetImiss.pdf
  59. BIN vignettes/{ → pdf}/checkRelatedness.pdf
  60. BIN vignettes/{ → pdf}/checkSex.pdf
  61. BIN vignettes/{ → pdf}/hwe.pdf
  62. BIN vignettes/pdf/individualQC.pdf
  63. BIN vignettes/{ → pdf}/maf.pdf
  64. BIN vignettes/{ → pdf}/markerQC.pdf
  65. BIN vignettes/{ → pdf}/overviewAncestryQC.pdf
  66. BIN vignettes/{ → pdf}/overviewMarkerQC.pdf
  67. BIN vignettes/{ → pdf}/overviewQC.pdf
  68. BIN vignettes/{ → pdf}/snpmissingness.pdf
  69. +8 −1 vignettes/plinkQC.Rmd
  70. BIN vignettes/snpmissingness.png

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