Find amino acid substitutions

Use find-aa-substitutions.pl to identify amino acid substitutions.

Requirements:

• SNP files
• GFF3 file
• Genomic FASTA reference file

Run PROVEAN

Use run-provean.pl to determine the putative functional severity of the amino acid changes.

Requirements:

• Amino acid substitution files
• CDS FASTA reference file
• PROVEAN installation

Filter PROVEAN results

Use filter-provean-results.pl to filter PROVEAN results for a single gene, a file containing a list of genes, or all genes within a genomic range.

Version 0.4.0