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Organizations

@combogenomics @RunnerPyzza

seer_pipeline

Run SEER with fewer headaches

Python

ncbi-genome-download

forked from kblin/ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Python

Scoary

forked from AdmiralenOla/Scoary

Pan-genome wide association studies

Python

eggnog-mapper

forked from jhcepas/eggnog-mapper

A program for bulk functional annotation of novel protein sequences using the EggNOG database.

Python

biopython

forked from peterjc/biopython

My fork of the official Biopython repository, used for experimental branches etc

Python

Roary

forked from sanger-pathogens/Roary

Rapid large-scale prokaryote pan genome analysis

Perl

python_plotting_snippets

Tips and tricks for plotting in python

Jupyter Notebook

jupyter_example_pipeline

Simple example on how you can automate reproducible analyses using jupyter notebooks

Jupyter Notebook

int3dInterfaces

forked from evocellnet/int3dInterfaces

Pipeline to extract protein interfaces from Interactome3d structures

Perl

reads2snps

From second generation sequencing reads to variant calls

Makefile

reads2genome

From second generation sequencing reads to annotated bacterial genome

Python

reads2transcriptome

From second generation sequencing reads to base counts

Python

2015_summer_school

Data for the 2015 Wellcome Trust summer school in Bioinformatics

Python

py-burrows-wheeler

Automatically exported from code.google.com/p/py-burrows-wheeler

Python

align_upstreams

Align and study transcription factor binding sites

Python

bacteria2go

Quick and dirty script to download and analyse bacterial genomes from NCBI

Python

seaborn

forked from mwaskom/seaborn

Statistical data visualization using matplotlib

Python

nuncha

Music with a Wii nunchuck

C++

lightning-talks

forked from pynxton/lightning-talks

Slides and background material for lightning talks

JavaScript

LS-BSR

forked from jasonsahl/LS-BSR

Large scale Blast Score Ratio (BSR) analysis

Python

abstractFFT

"Abstract" paintings using Fourier transform tricks

Shell

Mozzi

forked from sensorium/Mozzi

a sound synthesis library for Arduino

C

bacteria2model

Quick and dirty scripts to build a bacterial genomic model

Python

PhDGala

My PhD thesis

TeX

DraftMeliloti

Draft contigs of two S. meliloti strains Vs. closed sequences

parapy

forked from EBosi/parapy

paralell inparanoid

Python

nbconvert

forked from slojo404/nbconvert

IPython notebook converter

Python

hyphy

forked from veg/hyphy

HyPhy: Hypothesis testing using Phylogenies

C++

CONTIGuator

forked from combogenomics/CONTIGuator

Bacterial genomes finishing tool for structural insights on draft genomes

Python