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Function to check GFF #13

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lpantano opened this issue Oct 4, 2017 · 0 comments
Open

Function to check GFF #13

lpantano opened this issue Oct 4, 2017 · 0 comments
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good first issue help wanted internal
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v0.3.0

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@lpantano
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lpantano commented Oct 4, 2017 •
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Check minimum attributes are there, show possible others to add. Code should be inside gff/check.py

Here there are multiple examples:

https://github.com/miRTop/mirtop/blob/dev/data/examples/gff/*gff

correct_file.gff should give no warnings, the rest has something wrong.

The definition of the format is here:

https://github.com/miRTop/incubator/blob/master/format/definition.md
@lpantano lpantano modified the milestones: v0.1.0, v0.2.0 Jan 18, 2018
@lpantano lpantano modified the milestones: v0.2.0, v0.3.0 Mar 16, 2018
This was referenced Jun 30, 2018
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lpantano added a commit that referenced this issue Jun 30, 2018
@lpantano
Merge pull request #42 from vbarrera/dev_validator
64a49b8 
Dev validator

#13
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