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Popular repositories

  1. genomer

    A Swiss army knife for genome projects

    Ruby 16

  2. bioinformatics-career-survey

    Survey of bioinformatics field

    R 15 5

  3. organised_experiments

    Example of how bioinformatics experiments can be organised using object relational mapping, rake files, and data validations

    Ruby 13 1

  4. pubmed-boson

    Query NCBI pubmed at the command line using ruby and boson.

    Ruby 7

  5. scaffolder-tools

    Forked from next-gs/scaffolder-tools

    Set of tools for manipulating sequence assemblies specified by yaml configuration files.

    Ruby 7 2

  6. dotfiles

    Various configuration files

    Shell 5

1,427 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

February 2017

Created a pull request in koadman/docker-A5-miseq that received 5 comments

Convert Docker image to be biobox compatible

Aaron, I'd like to make your image compatible with the rest of the images on bioboxes. I've made some changes, mainly to convert the biobox.yaml in…

Created an issue in bcgsc/abyss that received 7 comments

Abyss appears to struggle with read orientation when processing multiple displacement amplification data (i.e. single cell)

I've been benchmarking abyss on single cell data and got the following error: abyss-map -j2 -l40 reads.fq.gz genome-3.fa \ |abyss-fixmate -l40 -h g…

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