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This a set of bioinformatics experiments as well as a dynamic webpage to display the results ## model This directory contains a set of datamapper classes that allow rows in the database to be manipulated as simple ruby objects. * project.rb Main class that describes the entire project * gene.rb Holds sequence data about yeast genes ## config Contains general ruby configuration data, as well as ramaze configuration * environment.rb Requires necessary ruby gems. Loads databases parameters. Loads classes and controllers. * database.yml Database access parameters. In YAML format. Should be created for each installation of this code. * config,yml General project configuration parameters. Ramaze port, server, and rendering engine. Should also be configured for each installation. ## controller Ramaze controllers that serve up data to views ## view HTML generators for www front ## spec Data testing classes using rspec ## analysis Rake files and data that run the bioinformatics analysis. Organised by linear running order, ie 002 should only depend on data from 001, and nothing from 003. ## start.rb Starts the ramaze web server