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Reorganise plotting scripts

Signed-off-by: Michael Barton <mail@michaelbarton.me.uk>
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1 parent 103eeb7 commit 4dbe57431c2647c1608e70b300ba025c1e2997fc @michaelbarton committed Apr 3, 2013
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1 .gitignore
@@ -2,4 +2,5 @@
*.csv
*.gp
*.xz
+*.tab
genomes
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8 Makefile
@@ -1,9 +1,9 @@
all: gene_density.eps dotplot.eps growth.eps
-growth.eps: bin/plot_growth growth_data.csv
+growth.eps: plot/growth growth_data.csv
$^ $@
-dotplot.eps: bin/dotplot synteny.tab
+dotplot.eps: plot/dotplot synteny.tab
$^ $@
synteny.tab: bin/align genomes/.fasta
@@ -18,7 +18,7 @@ genomes/.fasta: bin/fasta genomes/.decompressed
ls $(dir $(lastword $^))**/**/genome.gb | parallel $<
touch $@
-gene_density.eps: bin/plot_gene_density gene_count.csv
+gene_density.eps: plot/gene_density gene_count.csv
$^ $@
gene_count.csv: bin/count genomes/.decompressed
@@ -35,4 +35,4 @@ genomes.tar.xz:
s3cmd get s3://com-cavescience-r124-manuscript/$@
clean:
- rm -rf genomes/ *.csv *.eps
+ rm -rf genomes/ *.csv *.eps *.tab
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0 bin/dotplot → plot/dotplot
File renamed without changes.
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0 bin/plot_gene_density → plot/gene_density
File renamed without changes.
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0 bin/plot_growth → plot/growth
File renamed without changes.
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4,955 synteny.tab
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