A command line tool for processing genome scaffolds defined by the genome scaffolder API.
Output scaffold to fasta format.
Test inserts do not overlap in the scaffold.
Ruby and RubyGems are required to use scaffolder. Scaffolder tools is installed on the command line using:
$ gem install scaffolder-tools
Command line usage can be found by running the following:
$ scaffolder help
A unix man page is available for each scaffolder command by typing:
$ scaffolder help COMMAND
Scaffolder was developed by Michael Barton (www.michaelbarton.me.uk). The website for scaffolder is at next.gs and a twitter feed for updates is available. There is a Google group for questions and comments. The source code is available on github. Bug reports and feature requests may also be made there.
Scaffolder © 2010 by Michael Barton. Scaffolder is licensed under the MIT license. Please see the LICENSE document for more information.