Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
Set of tools for manipulating sequence assemblies specified by yaml configuration files.
Ruby

This branch is 1 commit ahead of next-gs:master

Fetching latest commit…

Cannot retrieve the latest commit at this time

Failed to load latest commit information.
bin
features
lib/scaffolder
man
spec
.document
.gitignore
.rspec
.travis.yml
Gemfile
LICENSE.txt
README.rdoc
Rakefile
VERSION
scaffolder-tools.gemspec

README.rdoc

Synopsis

A command line tool for processing genome scaffolds defined by the genome scaffolder API.

Feature List

  • Output scaffold to fasta format.

  • Test inserts do not overlap in the scaffold.

Installing

Ruby and RubyGems are required to use scaffolder. Scaffolder tools is installed on the command line using:

$ gem install scaffolder-tools

Documentation

Command line usage can be found by running the following:

$ scaffolder help

A unix man page is available for each scaffolder command by typing:

$ scaffolder help COMMAND

Contact

Scaffolder was developed by Michael Barton (www.michaelbarton.me.uk). The website for scaffolder is at next.gs and a twitter feed for updates is available. There is a Google group for questions and comments. The source code is available on github. Bug reports and feature requests may also be made there.

Copyright

Scaffolder © 2010 by Michael Barton. Scaffolder is licensed under the MIT license. Please see the LICENSE document for more information.

Something went wrong with that request. Please try again.