A command line tool for processing genome scaffolds defined by the genome scaffolder API.
Output scaffold to fasta format.
Test inserts do not overlap in the scaffold.
Ruby and RubyGems are required to use scaffolder. Scaffolder tools is installed on the command line using:
$ gem install scaffolder-tools
Command line usage can be found by running the following:
$ scaffolder help
A unix man page is available for each scaffolder command by typing:
$ scaffolder help COMMAND
Scaffolder was developed by Michael Barton (www.michaelbarton.me.uk). Pull requests, patches and bug reports are welcome. The source code is available on github. Bug reports and feature requests should be made here.
Scaffolder © 2010 by Michael Barton. Scaffolder is licensed under the MIT license. Please see the LICENSE document for more information.