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Genome scaffolding for human beings.
Ruby
Branch: validate
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lib
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README.rdoc
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scaffolder.gemspec

README.rdoc

scaffolder

Description goes here.

Base

* Inserts processed are processed in reverse order according to end position. Last insert added up until first insert, preserves insert coordinates.
* Overlapping inserts may cause unexpected behaviour
* Sequence reversed (if specified) after inserts have been added.

Validate

* Detects overlapping inserts
* Detects inserts which don't map to the inserted region for a given percentage identity

Note on Patches/Pull Requests

  • Fork the project.

  • Make your feature addition or bug fix.

  • Add tests for it. This is important so I don't break it in a future version unintentionally.

  • Commit, do not mess with rakefile, version, or history. (if you want to have your own version, that is fine but bump version in a commit by itself I can ignore when I pull)

  • Send me a pull request. Bonus points for topic branches.

Copyright

Copyright © 2010 Michael Barton. See LICENSE for details.

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