@microgenomics

Microbial Genomics at CBIB

This is the Github site for the Microbial Genomics lab at the CBIB

  • Python 3 Updated Apr 22, 2018
  • In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

    Python 31 20 MIT Updated Apr 1, 2018
  • This script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta

    Shell 2 GPL-2.0 Updated Sep 21, 2017
  • Repositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017

    Perl GPL-3.0 Updated Sep 20, 2017
  • Files accompanying human microbiome analysis protocol

    Updated Jul 19, 2017
  • Repositorio para el taller de Bioinformática a realizarse en la Universidad de Tarapacá, Arica, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017.

    GPL-3.0 Updated May 25, 2017
  • Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on development), constrains (metaphlan dependent))

    Shell 1 1 GPL-2.0 Updated Apr 28, 2017
  • Analysis Methods Module is a final module from SEPA ( a multi pipe to test pathogen software detection), that analyze the cvs file provided by Parse Module (or your own cvs file in particular format), the analysis aviable are R^2, RRMSE (relative error) and ROC Curve

    Shell 1 GPL-2.0 Updated Jan 27, 2017
  • execution Methods Module is the second module from SEPA (Simulation, Execution, Parse and Analysis, a multi pipe to test pathogen software detection), that take the softwares (pathoscope, metaphlan, metamix, sigma and constrains), and execute in an independent process (can be execute multiple times)

    Shell 1 GPL-2.0 Updated Jan 24, 2017
  • the first module of SEPA to simulate reads from genomes

    Shell GPL-3.0 Updated Nov 14, 2016
  • multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.

    Python 1 GPL-3.0 Updated Aug 17, 2016
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