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  1. Scripts to calculate the nested structure of a bipartite matrix and the null models used to test the statistical significance of nestedness.

    MATLAB 1

  2. Configuration files and data set used in the following study: "Non-adaptive origins of evolutionary innovations increase network complexity in interacting digital organisms", published in the speci…

    Shell 1

  3. Jupyter notebook writen in R to access, download, manipulate, analyze, and plot data on the species interaction networks stored in the Web Of Life database (a kind of API).

    Jupyter Notebook 1 1

  4. Data set and R code used in the following study: "Phylogenetically-conserved bird migration networks determine the distribution of avian flu", which has been recently submitted (2020).

    R 1

  5. Configuration files and bash scripts used in the following study: "The genotype-phenotype map of an evolving digital organism", published in PLoS Computational Biology (2017).

    Shell

  6. Dataset and R code used in the following study: "Coevolutionary dynamics shape the structure of bacteria-phage infection networks", published in Evolution (2019).

    R

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January 2021

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