Universal tool for processing molecular-barcoded Next Generation Sequencing data.
MiNNN is in beta, and is intended only for testing and evaluation.
Feature requests and bug reports are very welcome!
- Data with sample barcodes
- Perform demultiplexing by known barcode sequences
- Single-cell data
- Correct sequencing/PCR errors in cell barcodes
- Demultiplex the data
- Process data with Unique Molecular Identifier (UMI)
- Correct sequencing/PCR errors in UMI
- Assemble sequences by UMI
- Any combinations of above,
- Powerful syntax for barcode parsing
- Very fast barcode extraction engine (in most cases process data as fast as your file system can feed it)
- Fast and accurate algorithms for barcode clustering/correction with full support of indels
- Comprehensive sequence assemble algorithm
- corrects both mismatches and indels
- detects and extracts multiple sequence clusters for single UMI
Documentation is available at http://minnn.readthedocs.io/
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