MiXCR: a universal tool for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data
MiXCR is a universal framework that processes big immunome data from raw sequences to quantitated clonotypes. MiXCR efficiently handles paired- and single-end reads, considers sequence quality, corrects PCR errors and identifies germline hypermutations. The software supports both partial- and full-length profiling and employs all available RNA or DNA information, including sequences upstream of V and downstream of J gene segments.
MiXCR is free for academic and non-profit use (see :ref:`License <license>`).
.. toctree:: :hidden: :caption: Getting started :maxdepth: 3 install quickstart
.. toctree:: :hidden: :caption: Main actions :maxdepth: 1 align assemble export
.. toctree:: :hidden: :caption: Special cases :maxdepth: 1 rnaseq importSegments newAligner
.. toctree:: :hidden: :caption: In-depth topics :maxdepth: 1 geneFeatures appendix utils license