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Fix for backward compatibility of vdjca files produced by MiXCR 2.1.2…

… and lower with kaligner2. This fixes #255
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dbolotin committed Jul 24, 2017
1 parent 8a72d30 commit e5eaac12b80e337fa2e6fbfa3a3092329202a9da
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@@ -0,0 +1 @@
Fixed backward compatibility of `*.vdjca` files produced by MiXCR 2.1.2 and lower with `kaligner2`.
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@@ -44,14 +44,14 @@
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<milib.version>1.8</milib.version>
<milib.version>1.8.1</milib.version>
</properties>
<dependencies>
<dependency>
<groupId>io.repseq</groupId>
<artifactId>repseqio</artifactId>
<version>1.2.9</version>
<version>1.2.10</version>
</dependency>
<dependency>
Submodule repseqio updated 2 files
+6 −0 CHANGELOG
+2 −2 pom.xml
@@ -44,6 +44,7 @@
public void testAlignments() throws Exception {
assertGoodVDJCA("/backward_compatibility/2.1.0/test.vdjca.gz", 76);
assertGoodVDJCA("/backward_compatibility/2.1.2/test.vdjca.gz", 76);
assertGoodVDJCA("/backward_compatibility/2.1.2-kAligner2/test.vdjca.gz", 78);
}
public static void assertGoodVDJCA(String resource, int size) throws IOException {
@@ -67,6 +68,7 @@ public static void assertGoodVDJCA(String resource, int size) throws IOException
public void testBC16Cloneset() throws Exception {
assertGoodCLNS("/backward_compatibility/2.1.0/test.clns.gz", 22, 17);
assertGoodCLNS("/backward_compatibility/2.1.2/test.clns.gz", 22, 17);
assertGoodCLNS("/backward_compatibility/2.1.2-kAligner2/test.clns.gz", 21, 16);
}
public static void assertGoodCLNS(String resource, int size, int good) throws IOException {

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