Fix for NPE in assemble action invoked with -OmaxBadPointsPercent=0

milaboratory · Nov 11, 2016 · f71d8fe · f71d8fe
1 parent 46aae5c
commit f71d8fe
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diff --git a/CHANGELOG_CURRENT b/CHANGELOG_CURRENT
@@ -0,0 +1 @@
+Fix for NPE in assemble action invoked with `-OmaxBadPointsPercent=0`
diff --git a/src/main/java/com/milaboratory/mixcr/assembler/CloneAssembler.java b/src/main/java/com/milaboratory/mixcr/assembler/CloneAssembler.java
@@ -181,7 +181,8 @@ public VoidProcessor<VDJCAlignments> getInitialAssembler() {
     }
 
     public boolean beginMapping() {
-        globalLogger.end(totalAlignments.get());
+        if (globalLogger != null)
+            globalLogger.end(totalAlignments.get());
         if (!parameters.isMappingEnabled())
             return false;