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Commits on Aug 22, 2018
  1. Fix for bad merge.

    dbolotin committed Aug 22, 2018
  2. Merge branch 'master' into develop

    dbolotin committed Aug 22, 2018
    # Conflicts:
    #	doc/export.rst
    #	pom.xml
    #	src/main/java/com/milaboratory/mixcr/vdjaligners/VDJCAlignerS.java
    #	src/test/java/com/milaboratory/mixcr/util/RunMiXCRTest.java
  3. Release v2.1.12

    dbolotin committed Aug 22, 2018
  4. Changelog.

    dbolotin committed Aug 22, 2018
  5. Copyright update.

    dbolotin committed Aug 22, 2018
Commits on Aug 21, 2018
  1. To prev.

    dbolotin committed Aug 21, 2018
  2. Report lines description.

    dbolotin committed Aug 21, 2018
Commits on Aug 17, 2018
  1. To previous commit.

    dbolotin committed Aug 17, 2018
Commits on Jul 30, 2018
  1. Guava removed from deps.

    dbolotin committed Jul 30, 2018
Commits on Jul 29, 2018
Commits on Jul 20, 2018
  1. Docs for BaseSpace app (#406)

    dbolotin committed Jul 20, 2018
    * On the way
    
    * WIP
Commits on Jul 18, 2018
Commits on Jul 16, 2018
  1. Implementation of uber action (analyze) and enhancement of MiXCR bina…

    PoslavskySV authored and dbolotin committed Jul 16, 2018
    …ry format (store file history) (#395)
    
    * save
    
    * init
    
    * Minor cosmetic:
     - failed to implement subcommands since printed usage with "-h"  is awful
     - hide some parameters for rep-seq action
    
    * Saving analysis history in binary files on road
    
    * update milib submodule
    
    * fixing tests
    
    * Storing full pipeline configuration in all MiXCR binary files almost done (tests needed).
    
    * Simple action to print pipeline info for binary file
    
    * Final implementation of pipeline configurations in binary files & uber action
    
    * update milib submodule
    
    * minor
    
    * update for new JCommander
    
    * further fixes & b-cell option
    
    * update repseq dep
    
    * Minor fixes & enhancements. This fixes #398
  2. Update issue templates (#390)

    PoslavskySV authored and dbolotin committed Jul 16, 2018
    * Update issue templates
    
    * Some corrections
Commits on Jul 12, 2018
  1. This fixes #338

    PoslavskySV committed Jul 12, 2018
Commits on Jun 28, 2018
  1. Fixing UI issues

    dbolotin authored and PoslavskySV committed Jun 28, 2018
    This fixes #342
    This fixes #292
    This fixes #280
    This fixes #279
    This fixes #208
    This fixes #203
Commits on Jun 14, 2018
  1. Merge branch 'hotfix/v2.1.11' into develop

    dbolotin committed Jun 14, 2018
    # Conflicts:
    #	.travis.yml
    #	mixcr
    #	pom.xml
    #	repseqio
    #	src/main/java/com/milaboratory/mixcr/cli/ActionAssemble.java
    #	src/main/java/com/milaboratory/mixcr/cli/ActionExportClones.java
    #	src/main/java/com/milaboratory/mixcr/cli/ActionExtendAlignments.java
  2. Release v2.1.11

    dbolotin committed Jun 14, 2018
Commits on May 29, 2018
  1. update changelog

    PoslavskySV committed May 29, 2018
  2. updates

    PoslavskySV committed May 29, 2018