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Commits on Oct 30, 2018
  1. Release v3.0.2

    dbolotin committed Oct 30, 2018
  2. Changelog.

    dbolotin committed Oct 30, 2018
Commits on Oct 25, 2018
  1. Release v3.0.1

    dbolotin committed Oct 25, 2018
  2. Version.

    dbolotin committed Oct 25, 2018
Commits on Oct 24, 2018
  1. changelog.

    dbolotin committed Oct 24, 2018
  2. This fixes #401.

    dbolotin committed Oct 24, 2018
  3. Integrity check (#444)

    dbolotin committed Oct 24, 2018
    This fixes #397
  4. Fix to allow repeated options with the same name but different parame…

    dbolotin committed Oct 24, 2018
    …ter values in `exportClones` / `exportAlignments`. (#442)
Commits on Oct 23, 2018
  1. Release v3.0

    dbolotin committed Oct 23, 2018
  2. 3.0

    dbolotin committed Oct 23, 2018
  3. Minor fix for changelog.

    dbolotin committed Oct 23, 2018
  4. Added implicit aligner type to aligner settings (no more default alig…

    dbolotin committed Oct 23, 2018
    …ner type).
    
    Additional migration for Jeckson.
  5. Library version update.

    dbolotin committed Oct 23, 2018
  6. Testfix.

    dbolotin committed Oct 23, 2018
  7. Minor fixes. (#441)

    dbolotin committed Oct 22, 2018
    * Minor fixes.
    
    * minors
Commits on Sep 28, 2018
  1. Alignment compression (#426)

    dbolotin committed Sep 28, 2018
    This allows to decrease output file size (vdjca and clna) 4-fold.
    
    Implements block-compression of alignments with LZ4 algorithm.
    
    Uses parallel compression to keep up with massive output from aligner in highly multithreaded environments. 1 compression thread per 8 processing threads in align action.
    
    Fast compression implemented, but not connected to any input options. Also requires additional testing.
Commits on Aug 22, 2018
  1. Fix for bad merge.

    dbolotin committed Aug 22, 2018
  2. Merge branch 'master' into develop

    dbolotin committed Aug 22, 2018
    # Conflicts:
    #	doc/export.rst
    #	pom.xml
    #	src/main/java/com/milaboratory/mixcr/vdjaligners/VDJCAlignerS.java
    #	src/test/java/com/milaboratory/mixcr/util/RunMiXCRTest.java
  3. Release v2.1.12

    dbolotin committed Aug 22, 2018
  4. Changelog.

    dbolotin committed Aug 22, 2018