Bug in GeneFeature#intersection when using -OvParameters.geneFeatureToAlign=VGeneWithP #219

Closed
PoslavskySV opened this Issue Feb 28, 2017 · 1 comment

Comments

Projects
None yet
2 participants
@PoslavskySV
Member

PoslavskySV commented Feb 28, 2017

mixcr align -OvParameters.geneFeatureToAlign=VGeneWithP input.fastq.gz output.vdjca
mixcr assemble output.vdjca output.clns

causes

Exception in thread "main" java.lang.IllegalArgumentException

at io.repseq.core.GeneFeature.intersection0(GeneFeature.java:444)
at io.repseq.core.GeneFeature.intersection(GeneFeature.java:384)
at io.repseq.core.GeneFeature.intersection(GeneFeature.java:353)
at com.milaboratory.mixcr.cli.ActionAssemble.go(ActionAssemble.java:99)
at com.milaboratory.cli.JCommanderBasedMain.main(JCommanderBasedMain.java:147)
at com.milaboratory.mixcr.cli.Main.main(Main.java:120)
@dbolotin

This comment has been minimized.

Show comment
Hide comment
@dbolotin

dbolotin Mar 2, 2017

Member

Add tests for exact case.

Member

dbolotin commented Mar 2, 2017

Add tests for exact case.

@dbolotin dbolotin reopened this Mar 2, 2017

@dbolotin dbolotin closed this in 7069820 Mar 2, 2017

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment