A package for population structure inference from RAD-seq data
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config
AUTHORS
COPYING
ChangeLog
FinestructureLibrary.R
INSTALL
Makefile.am
Makefile.in
NEWS
README
Stacks2fineRAD.py
aclocal.m4
configure
configure.ac
data.cpp
data.h
fineRADstructurePlot.R
fines.cpp
fines.h
finesfunctions.cpp
finesfunctions.h
fsxml.cpp
fsxml.h
gzstream.cpp
gzstream.h
hapsFromVCF.cpp
hapsFromVCF.h
inf1.cpp
inf1.h
infadmixture.cpp
infadmixture.h
infextract.cpp
infextract.h
infextract2.cpp
infextract2.h
infextract3.cpp
infextract3.h
infextract4.cpp
infextract4.h
infextract5.cpp
infextract5.h
infmcmc.cpp
infmcmc.h
node.cpp
node.h
paintSql.cpp
paintSql.h
rng.cpp
rng.h
safegetline.cpp
safegetline.h
sampleLD.R
state.cpp
state.h
tagPainter.cpp
tagPainter.h
utils.cpp
utils.h

README

README FOR fineRADstructure

For detailed instructions see http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html

A manuscript to cite has been published in MBE: https://doi.org/10.1093/molbev/msy023

1. REQUIREMENTS

Assuming that you are in a Linux/UNIX like environment, you need:
1. an up-to-date version of the gcc compiler, e.g. "gcc (Ubuntu 4.4.3-4ubuntu5) 4.4.3"
2. GNU Scientific Development Library, (libgsl0-dev and libgsl0 in Ubuntu, gsl-devel in OpenSUSE) 
3. Mac/Apple users need to have the Command Line Tools installed

There are probably other requirements which are present on most systems by default.  

2. INSTALLATION

Briefly:

./configure
make

3. FURTHER INFORMATION

This package includes two exacutables: RADpainter and fineSTRUCTURE

RADpainter was written by Milan Malinsky (milan.malinsky@unibas.ch) and fineSTRUCTURE was written by Daniel Lawson (dan.lawson@bristol.ac.uk)