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Commits on Jul 15, 2009
  1. Feature for this RDF-backed version

    egonw committed with egonw May 29, 2009
  2. Compile errors for recent API changes

    egonw committed with egonw May 29, 2009
  3. DBMolecule Id and Name are now roundtripped

    egonw committed with egonw May 29, 2009
  4. Use a local test db, so that I can make an assertion on the database …

    …triple count
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10839 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw May 29, 2009
  5. Removed obsolete file

    egonw committed with egonw May 29, 2009
  6. Throw RuntimeException instead of failing: this better distinguishes …

    …between unimplemented tests and actual failing tests
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10836 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw May 29, 2009
  7. Added test data and setUp method for manager tests

    egonw committed with egonw May 29, 2009
  8. Towards unit testing...

    egonw committed with egonw May 29, 2009
  9. Setting up a test suite

    egonw committed with egonw May 29, 2009
  10. Compile errors for recent API changes

    egonw committed with egonw May 29, 2009
  11. DBMolecule Id and Name are now roundtripped

    egonw committed with egonw May 29, 2009
  12. Towards unit testing...

    egonw committed with egonw May 29, 2009
  13. Also extend the IBioclipseManager interface

    egonw committed with egonw May 29, 2009
  14. OK, now properly recognized: apparently it needs a unique interface t…

    …o be loaded correctly.
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10826 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw May 29, 2009
  15. Renamed things properly

    egonw committed with egonw May 29, 2009
  16. Template for a RDF-backed structureDB

    egonw committed with egonw May 29, 2009
  17. Added some dependency info

    egonw committed Jul 15, 2009
Commits on Jul 11, 2009
  1. Set up the Pellet plugin and feature (licensed AGPL v3), with links t…

    …o the clarkparsia.com website
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10855 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw May 29, 2009
  2. Updated the source files using Pellet explicitly to state that it is …

    …license AGPL v3
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10820 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw May 28, 2009
  3. renamed IBioclipseManager.getNameSpace into IBioclipseManager.getMana…

    …gerName. Fixes bug: #895
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10775 fcb5ba71-d80d-0410-8237-ba3920747fcc
    jonalv committed with egonw May 27, 2009
  4. Generalized owl.listClasses() into rdf.isRDFType()

    egonw committed with egonw May 23, 2009
  5. Added helper manager for handling OWL

    egonw committed with egonw May 23, 2009
  6. Factored out a new interface defining the getModel() method, to allow…

    … pellet and rdf managers to work on the stores the both create (which share the new interfaces). In the future, the managers can have a back up route via an RDF serialization.
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@11581 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw Jul 1, 2009
  7. Added support for multiple DOIs:

    * refactored .doi() to return a String[] because the DOI specs allow so many characters
      a 'X'-separated list is impossible
    * added a PublishedClass.doi field
    * added output of DOI info for 'man <MANAGER>'
    
    git-svn-id: https://bioclipse.svn.sourceforge.net/svnroot/bioclipse/bioclipse2/trunk@10869 fcb5ba71-d80d-0410-8237-ba3920747fcc
    egonw committed with egonw May 29, 2009
  8. Added DOI to further literature

    egonw committed with egonw May 29, 2009
  9. Tuned summaries a bit towards RDF

    egonw committed with egonw May 29, 2009