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Branch: master
Commits on Mar 23, 2012
  1. @fangly

    Preferring get_all_tags() and get_tag_values() over all_tags() and ea…

    fangly authored
    …ch_tag_value() in SeqFeatures for consistency + compliance with SeqFeatureI + indentation cleaning
Commits on Mar 14, 2012
Commits on Mar 13, 2012
  1. add some documentation indicating change

    Chris Fields authored
  2. require Graph >= 0.5

    Chris Fields authored
  3. silence subroutine warning from redefinition

    Chris Fields authored
Commits on Mar 9, 2012
  1. @lstein
  2. @lstein
Commits on Mar 7, 2012
  1. @fangly

    Sane deprecation

    fangly authored
  2. @fangly
  3. @fangly
  4. @fangly
  5. @fangly

    Removed tabs

    fangly authored
  6. @fangly
Commits on Mar 6, 2012
  1. @fangly

    Better return non-compiled regexp so that it is easier to manipulate …

    fangly authored
    …downstream, e.g. with Bio::Tools::SeqPatterns
Commits on Mar 5, 2012
  1. @fangly
  2. @fangly

    Formatting

    fangly authored
  3. @fangly
  4. @fangly

    SeqFeature::Annotated tests

    fangly authored
  5. @fangly
  6. @fangly
  7. @fangly
  8. @fangly
  9. @fangly

    For SeqFeatureI compliance, Bio::SeqFeature::Generic primary_tag(), s…

    fangly authored
    …ource_tag() and display_name() methods must return a string, not undef
  10. @fangly

    Tiny change

    fangly authored
Commits on Mar 3, 2012
  1. @fangly

    Fix for Debian bug #661793, reported by and solved by Olivier Sallou …

    fangly authored
    …<olivier.sallou@irisa.fr>
  2. @fangly
  3. @fangly

    IUPAC doc update

    fangly authored
  4. @fangly
  5. @fangly
Commits on Mar 2, 2012
  1. @fangly

    POD harmonization

    fangly authored
  2. @fangly
  3. @fangly

    Bio::RangeI is redundant because Bio::SeqFeatureI and Bio::LocationI …

    fangly authored
    …already inherit from Bio::RangeI
Commits on Mar 1, 2012
  1. @fangly

    Reversing previous commit because of the complications associated wit…

    fangly authored
    …h recommending Bio::DB::Sam
  2. @fangly
  3. @fangly
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