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| % command to run this on the terminal is lualatex -shell-escape Pictogram_Sleep_Regulation.tex | |
| % requires pgfplots | |
| \pdfpxdimen=1in | |
| \divide\pdfpxdimen by 600 | |
| \documentclass[10pt]{standalone} | |
| \usepackage{tikz} | |
| %has to be compiled with ``lualatex -shell-escape Pictogram_TC.tex'' | |
| \usetikzlibrary{external, positioning, backgrounds, arrows.meta,decorations.pathmorphing} | |
| % set up externalization | |
| %\tikzexternalize[prefix=tikz/] | |
| % WARNING the name of the Image CANNOT be the same as the tex file | |
| \tikzsetnextfilename{Pictogram_TC} | |
| \tikzset{external/system call={lualatex \tikzexternalcheckshellescape -halt-on-error | |
| -interaction=batchmode -jobname "\image" "\texsource"; | |
| convert -density 600 -compress LZW "\image".pdf -flatten -alpha off -colorspace RGB -depth 8 "\image".tif; | |
| convert -density 600 "\image".tif "\image".jpg;}} | |
| \tikzexternalize | |
| \begin{document} | |
| \begin{tikzpicture}[ | |
| s/.style = {shorten >=1pt}, | |
| every loop/.style={shorten >=1pt}, | |
| pop/.style = {rectangle, draw, text width=10em, text centered, minimum height=3em, rounded corners=3mm}, | |
| noise_C/.style = {decorate, decoration={zigzag}, s,-{Circle[fill=blue!30]}}, | |
| noise_T/.style = {decorate, decoration={zigzag}, s,-{Circle[fill=green!30]}}, | |
| Ex/.style = {rounded corners, s, -{Circle[fill=blue!30]}}, | |
| Tc/.style = {rounded corners, s, -{Circle[fill=green!30]}}, | |
| In/.style = {rounded corners, s, -|}, | |
| ] | |
| % Cortex populations | |
| \node (ex) at (0,0) [pop, fill=blue!30] {Pyramidal (p)}; | |
| \node (in) at (6,0) [pop, fill=yellow!30] {Inhibitory (i)}; | |
| % Thalamus Populations | |
| \node (tc) at (6,-2) [pop, fill=green!30] {Thalamocortical (t)}; | |
| \node (re) at (0,-2) [pop, fill=yellow!30] {Thalamic Reticular (r)}; | |
| % Connections within cortex | |
| \draw | |
| ( ex) edge [Ex, loop above] node[below left, xshift = -0.4em] {$N_{pp}$} ( ex) | |
| ([yshift= 0.2cm] ex.east) edge [Ex] node[above] {$N_{ip}$} ([yshift= 0.2cm]in.west) | |
| ([yshift=-0.2cm] in.west) edge [In] node[below] {$N_{pi}$} ([yshift=-0.2cm]ex.east) | |
| ( in) edge [In, loop above] node[below left, xshift = -0.4em] {$N_{ii}$} ( in) | |
| (0.5,1.22) edge [noise_C] node[right] {$\phi_n$} ([xshift= 0.5cm]ex.north) | |
| (6.5,1.22) edge [noise_C] node[right] {$\phi^{'}_n$} ([xshift= 0.5cm]in.north); | |
| % Connections within thalamus | |
| \draw | |
| (6.5,-3.22) edge [noise_T] node[right] {$\phi^{''}_{n}$}([xshift=0.5cm] tc.south) | |
| ([yshift= 0.15cm]tc.west) edge [Tc] node[above] {$N_{rt}$} ([yshift= 0.15cm] re.east) | |
| ([yshift=-0.15cm]re.east) edge [In] node[below] {$N_{tr}$} ([yshift=-0.15cm] tc.west) | |
| ( re) edge [In, loop below] node[above left, xshift = -0.4em] {$N_{rr}$} ( re); | |
| % TC connections | |
| \path | |
| (ex.south) edge [Ex] node[left] {$N_{rp}$} ([yshift= 0.02cm] re.north) | |
| (ex.south east) edge [Ex, bend right=15, yshift =-0.2em] node[at start,below]{$N_{tp}$} (tc.north west) | |
| (tc.north) edge [Tc] node[right] {$N_{it}$} ([yshift=-0.02cm] in.south) | |
| (tc.north west) edge [Tc, bend right=15, yshift = 0.2em] node[at start,above]{$N_{pt}$} (ex.south east); | |
| \end{tikzpicture} | |
| \end{document} |