/NM_TC

Implementation of the thalamic module proposed in Schellenberger Costa 2016a
  1. Matlab 73.2%
  2. C++ 24.4%
  3. TeX 1.3%
  4. Other 1.1%
Matlab C++ TeX Other

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Figures
Cortical_Column.cpp
Cortical_Column.h
Data_Storage.h
NM_TC.pro
ODE.h
README.md
Random_Stream.h
Stimulation.h
TC.cpp
TC_mex.cpp
Thalamic_Column.cpp
Thalamic_Column.h

README.md

#NM_TC

This repository contains the reference implementation of the model proposed in Schellenberger Costa and Weigenand et al. 2016, available here http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005022

For convenience we utilize MATLAB for data processing and plotting. Therefore the simulation comes with an additional source-file Thalamus_mex.cpp that can be compiled within MATLAB to utilize their C++-mex interface.

The easiest way to reproduce the figures in the paper is to simply run the Create_Data() function in the "Figures" folder within MATLAB, assuming the mex interface is set up. Afterwards simply run the respective plot functions for the different figures.

Please note that due to the stochastic nature of the simulation the time series will differ.