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| 1 | # NM_Thalamus | |
| 2 | This repository contains the reference implementation of the model proposed in Schellenberger Costa and Weigenand et al. 2016, | |
| 3 | available here http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005022 | |
| 4 | ||
| 5 | For convenience we utilize MATLAB for data processing and plotting. Therefore the simulation comes with an additional | |
| 6 | source-file Thalamus_mex.cpp that can be compiled within MATLAB to utilize their C++-mex interface. | |
| 7 | ||
| 8 | The easiest way to reproduce the figures in the paper is to simply run the Data_Thalamus() function in the "Figures" folder within | |
| 9 | MATLAB, assuming the mex interface is set up. Afterwards simply run the respective plot functions for the different figures. | |
| 10 | ||
| 11 | Additionaly the figures folder provides the Thalamus.ode file, that defines the model for the bifurcation analysis in xppaut. | |
| 12 | ||
| 13 | Please note that due to the stochastic nature of the simulation the time series will differ. |