From 102184a3688e3341be0cbbc19e1c8a39cf24574b Mon Sep 17 00:00:00 2001 From: Michael Schellenberger Costa Date: Sat, 1 Apr 2017 19:25:31 +0200 Subject: [PATCH] Create README.md --- README.md | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..91d2b2d --- /dev/null +++ b/README.md @@ -0,0 +1,13 @@ +# NM_Thalamus +This repository contains the reference implementation of the model proposed in Schellenberger Costa and Weigenand et al. 2016, +available here http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005022 + +For convenience we utilize MATLAB for data processing and plotting. Therefore the simulation comes with an additional +source-file Thalamus_mex.cpp that can be compiled within MATLAB to utilize their C++-mex interface. + +The easiest way to reproduce the figures in the paper is to simply run the Data_Thalamus() function in the "Figures" folder within +MATLAB, assuming the mex interface is set up. Afterwards simply run the respective plot functions for the different figures. + +Additionaly the figures folder provides the Thalamus.ode file, that defines the model for the bifurcation analysis in xppaut. + +Please note that due to the stochastic nature of the simulation the time series will differ.