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added loni.mk. modified Makefile to use /usr/lib64. Added libs. start…

…ed README.md.
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1 parent ee33ac5 commit 0911680fd6dc3e73037d702e6c7ed127ec1b37cf mistofvongola committed Oct 28, 2011
Showing with 58 additions and 48 deletions.
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  2. 0 {WPPsource → }/KNOWN-BUGS.txt
  3. 0 {WPPsource → }/LICENSE.txt
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0 WPPsource/INSTALL.txt → INSTALL.txt
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0 WPPsource/KNOWN-BUGS.txt → KNOWN-BUGS.txt
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0 WPPsource/LICENSE.txt → LICENSE.txt
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2 WPPsource/Makefile → Makefile
@@ -62,7 +62,7 @@ else
endif
WPPINC = $(WPPROOT)/include
-WPPLIB = $(WPPROOT)/lib
+WPPLIB = $(WPPROOT)/lib64
ifdef LIBLAPACK
linklibs = $(LIBLAPACK)/liblapack.a $(LIBLAPACK)/libblas.a
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38 README.md
@@ -0,0 +1,38 @@
+# WPP
+
+* I do not own WPP (Wave Propogation Program).
+* This is a modified version of WPP (based on v2.1) for use on the LONI systems.
+
+## Description
+WPP is a computer program for simulating seismic wave propagation on parallel machines. WPP solves the governing equations in second order formulation using a second order accurate finite difference approach. The numerical method uses summation by parts stencils to guarantee stability of the explicit time-stepping procedure. The stability holds for heterogeneous material models on Cartesian and curvilinear grids, free surface boundary conditions, mesh refinement interfaces with hanging nodes, and for heterogeneous visco-elastic materials.
+
+ The WPP code uses MPI for communication on parallel machines and has shown excellent performance on some of the world's largest supercomputers.
+
+ WPP implements substantial capabilities for 3-D seismic modeling, with a free surface condition on the top boundary, non-reflecting far-field boundary conditions on the other boundaries, point force and point moment tensor source terms with many predefined time dependencies, fully 3-D heterogeneous material model specification, elastic or visco-elastic materials, output of synthetic seismograms in the SAC format, output of GMT scripts for laying out simulation information on a map, and output of 2-D slices of (derived quantities of) the solution field as well as the material model. All these features are documented in a User's guide that can be found below.
+
+## Dependencies
+ intel-cc-11.1
+ intel-fc-11.1
+ mvapich2-1.4-intel-11.1
+ lapack-mvapich2-1.4-intel-11.1
+ blas-mvapich2-1.4-intel-11.1
+
+## Installation
+todo
+
+### LAPACK/BLAS
+todo
+
+### WPP
+todo
+
+## License
+WPP Version 2.1
+
+Copyright (C) 2007-2011 Lawrence Livermore National Security, LLC.
+
+WPP comes with ABSOLUTELY NO WARRANTY; released under GPL. This is free software, and you are welcome to redistribute it under certain conditions, see LICENSE.txt for more details.
+
+## Links
+[Serpentine Wave Propogation](https://computation.llnl.gov/casc/serpentine/index.html)
+[Louisiana Optical Network](http://loni.org/)
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0 WPPsource/README.txt → README.txt
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0 README → WPP-modified.txt
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38 WPPsource/configs/WPPbuild.painter.loni.org.make
@@ -1,38 +0,0 @@
-# 2011.07.13.LJS
-# This is a WPP compilation configuration file for the GNU make build system.
-# This file is a modified version of the file "make.tux" that is distributed with WPP v2.1.
-# This file's author really does not understand everything that is being done by this file but warmly hopes for the best.
-# This file targets a parallel-capable build intended to run on painter.loni.org using intel compilers and mvapich.
-# an appropriate software environment must be setup (modify your .soft file to include available precompiled dependencies & run "resoft")
-
-# compile time choices
-etree = no
-
-# Selection of compilers
- # for a given user on painter, the intel compilers were used for this makefile. Look it up on the LONI documentation. You might have to alter the ".soft" file.
-CXX = mpiCC
-CC = mpicc
-FC = mpif90
-
-# hardcoded paths in which precompiled dependinces are available.
- # MPILIB is the path that should point to the mpi implementation on your system.
- # for a given user on painter, once ".soft" is configured to include a MPI-2 implementation, then the "which mpirun" command can be used to find the directories near where the relevant "/lib" directory is. (if the MPI-2 implementation does not use mpirun, then find out what it does use instead of mpirun, and use which on that)
-MPILIB = /usr/local/packages/mvapich2/1.4/intel-11.1/lib
- # WPPROOT is the path that should point to the a directory that contains both a "/lib" subfolder and "/include" subfolder for all 3rd party libraries on your system that are not MPI and which are required for WPP. (according to WPP manual, a blas implementation is all that is necessary apart from MPI)
- # for a given user on painter, lapack is available at "/user/lib/liblapack.a".
-WPPROOT = /usr
- # FORTRANLIB
-FORTRANLIB = /usr/local/compilers/Intel/intel_fc_11.1/lib/intel64
-
-# "-L$(FORTRANLIB)" instructs compiler to look in "$(FORTRANLIB)" for linkable code
-# "-lifcore" instructs compiler to link ifcore (from wherever it can find it; here, $(FORTRANLIB) is added so that the compiler can find the library)
-# "-Wl,-rpath=$(MPILIB)" instructs compiler to pass the -rpath=$(MPILIB) flag directly to the linker (not the compiler).
-# "-rpath=$(MPILIB)" instructs the linker to hard code the $(MPIlIB) as an absolute path in which dependencies may be found (at runtime? at compile time?)
-# "-Wl,-rpath=$(WPPLIB)" instructs compiler to pass the -rpath=$(WPPLIB) flag directly to the linker (not the compiler).
-# "-rpath=$(WPPLIB)" instructs the linker to hard code the $(WPPLIB) as an absolute path in which dependencies may be found (at runtime? at compile time?)
-# I have no clue as to where WPPLIB gets its value, but at least it seems to work. I am unsure as to whether or not this is necessary.
-# "-Wl,-rpath=$(FORTRANLIB)" instructs compiler to pass the -rpath=$(FORTRANLIB) flag directly to the linker (not the compiler).
-# "-rpath=$(FORTRANLIB)" instructs the linker to hard code the $(FORTRANLIB) as an absolute path in which dependencies may be found (at runtime? at compile time?)
-# I am unsure as to whether or not this is necessary.
-EXTRA_LINK_FLAGS = -L$(FORTRANLIB) -lifcore -Wl,-rpath=$(MPILIB) -Wl,-rpath=$(WPPLIB) -Wl,-rpath=$(FORTRANLIB)
-
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0 WPPsource/configs/make.amac → configs/amac.mk
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14 WPPsource/configs/make.fc14 → configs/fc14.mk
@@ -1,7 +1,7 @@
-etree = no
-
-CXX = mpicxx
-FC = gfortran
-
-EXTRA_LINK_FLAGS = -lgfortran
-
+etree = no
+
+CXX = mpicxx
+FC = gfortran
+
+EXTRA_LINK_FLAGS = -lgfortran
+
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10 configs/loni.mk
@@ -0,0 +1,10 @@
+etree = no
+CXX = mpiCC
+CC = mpicc
+FC = mpif77
+WPPROOT = /usr
+LIBLAPACK = ./lib
+FORTRANLIB = /usr/local/compilers/Intel/intel_fc_11.1/lib/intel64
+EXTRA_CXX_FLAGS = -m64
+EXTRA_FORT_FLAGS = -m64
+EXTRA_LINK_FLAGS = -L$(FORTRANLIB) -lifcore -L$(WPPLIB) -lm
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#This script has zero elegant error handling.
#parameters to the script
-WPPbuild_configuration="WPPbuild.painter.loni.org.make"
+WPPbuild_configuration="loni.mk"
WPPsource_base=$(pwd)
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make
#sanity checks
-echo "quick_recompile.sh finished execution."
+echo "quick_recompile.sh finished execution."
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0 ...ls/visit/WPPImage/avtWPPImageFileFormat.h → tools/visit/WPPImage/avtWPPImageFileFormat.h
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0 WPPsource/tools/vs2blocks.m → tools/vs2blocks.m
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0 WPPsource/tools/wppfilter.m → tools/wppfilter.m
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0 WPPsource/tools/wppgetimage.m → tools/wppgetimage.m
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0 WPPsource/tools/writesac.m → tools/writesac.m
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0 WPPsource/wave.txt → wave.txt
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