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Publishing graphterm at Thu Mar 31 16:27:30 CDT 2016

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1 parent 9bf9362 commit 192d5d5e4d8807c4e6b2266ab148c59bcd744bc1 @mitotic committed Mar 31, 2016
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@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: e0af8873c74687f295274677b8cf80ff
+config: cb08bcc71717310dcc1a54b5cd18f4fd
tags: 645f666f9bcd5a90fca523b33c5a78b7
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48 R.html
@@ -26,7 +26,7 @@
<link rel="search" type="application/opensearchdescription+xml"
title="Search within GraphTerm 0.57.0 documentation"
href="_static/opensearch.xml"/>
- <link rel="top" title="GraphTerm 0.57.0 documentation" href="index.html" />
+ <link rel="top" title="GraphTerm 0.57.0 documentation" href="contents.html" />
<link rel="next" title="GraphTerm toolchain and features" href="features.html" />
<link rel="prev" title="Progressively fillable notebooks" href="progressive.html" />
@@ -77,19 +77,19 @@
</script>
</head>
- <body>
+ <body role="document">
<div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
<h1>
<a href="/">
-code.mindmeldr.com
+code.mitotic.org
<!--
<img height="60" src="http://doc.mindmeldr.com/_static/mmrbanner-transp1.png" alt="Mindmeldr banner" />
-->
</a>/<a href="/graphterm">graphterm</a>
</h1>
</div>
- <div class="related">
+ <div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
@@ -107,20 +107,22 @@
</ul>
</div>
- <div class="sphinxsidebar">
+ <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper">
<h4>Previous topic</h4>
<p class="topless"><a href="progressive.html"
title="previous chapter">Progressively fillable notebooks</a></p>
<h4>Next topic</h4>
<p class="topless"><a href="features.html"
title="next chapter">GraphTerm toolchain and features</a></p>
- <h3>This Page</h3>
- <ul class="this-page-menu">
- <li><a href="_sources/R.txt"
- rel="nofollow">Show Source</a></li>
- </ul>
-<div id="searchbox" style="display: none">
+ <div role="note" aria-label="source link">
+ <h3>This Page</h3>
+ <ul class="this-page-menu">
+ <li><a href="_sources/R.txt"
+ rel="nofollow">Show Source</a></li>
+ </ul>
+ </div>
+<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<form class="search" action="search.html" method="get">
<input type="text" name="q" />
@@ -139,17 +141,17 @@
<div class="document">
<div class="documentwrapper">
<div class="bodywrapper">
- <div class="body">
+ <div class="body" role="main">
<div class="section" id="using-graphterm-with-r">
<h1>Using GraphTerm with R<a class="headerlink" href="#using-graphterm-with-r" title="Permalink to this headline">¶</a></h1>
<p id="index-0">GraphTerm supports basic inline graphics display and the notebook
interface using R. The file <a class="reference external" href="https://github.com/mitotic/graphterm/blob/master/graphterm/bin/gterm.R">$GTERM_DIR/bin/gterm.R</a>
includes helper functions for using the GraphTerm API to display
-inline graphics. The following <tt class="docutils literal"><span class="pre">R</span></tt> packages need to be installed:
-<tt class="docutils literal"><span class="pre">RCurl</span></tt>, <tt class="docutils literal"><span class="pre">Cairo</span></tt>, and <tt class="docutils literal"><span class="pre">png</span></tt>. On Linux, the following additional
+inline graphics. The following <code class="docutils literal"><span class="pre">R</span></code> packages need to be installed:
+<code class="docutils literal"><span class="pre">RCurl</span></code>, <code class="docutils literal"><span class="pre">Cairo</span></code>, and <code class="docutils literal"><span class="pre">png</span></code>. On Linux, the following additional
libraries, or their equivalents, may need to be installed:
-<tt class="docutils literal"><span class="pre">libcurl4-openssl-dev</span> <span class="pre">libcairo2-dev</span> <span class="pre">libxt-dev</span></tt>. Here&#8217;s a plotting
+<code class="docutils literal"><span class="pre">libcurl4-openssl-dev</span> <span class="pre">libcairo2-dev</span> <span class="pre">libxt-dev</span></code>. Here&#8217;s a plotting
example:</p>
<div class="highlight-python"><div class="highlight"><pre>$ R -q
install.packages(c(&quot;RCurl&quot;, &quot;Cairo&quot;, &quot;png&quot;)) # The first time
@@ -168,13 +170,13 @@
<div class="figure align-center" style="width: 85%">
<a class="reference internal image-reference" href="https://github.com/mitotic/graphterm/raw/master/doc-images/gt-r.png"><img alt="https://github.com/mitotic/graphterm/raw/master/doc-images/gt-r.png" src="https://github.com/mitotic/graphterm/raw/master/doc-images/gt-r.png" style="width: 90%;" /></a>
</div>
-<p>The notebook mode of GraphTerm will also work with <tt class="docutils literal"><span class="pre">R</span></tt>, without any
+<p>The notebook mode of GraphTerm will also work with <code class="docutils literal"><span class="pre">R</span></code>, without any
additional software. GraphTerm can open Markdown files (in a format
very similar to <em>R-markdown</em>) as a notebook, and also saves notebooks
-using the same format. The file <tt class="docutils literal"><span class="pre">$GTERM_DIR/notebooks/R-histogram.R.md</span></tt>
-contains a sample notebook displaying inline graphics (see <a class="reference internal" href="screenshots.html#r-shot"><em>Inline plotting with R</em></a>). To open the
-notebook, click on it in the <tt class="docutils literal"><span class="pre">gls</span></tt> output, or use the
-<em>notebook/open</em> menu option after starting <tt class="docutils literal"><span class="pre">R</span></tt>.</p>
+using the same format. The file <code class="docutils literal"><span class="pre">$GTERM_DIR/notebooks/R-histogram.R.md</span></code>
+contains a sample notebook displaying inline graphics (see <a class="reference internal" href="screenshots.html#r-shot"><span>Inline plotting with R</span></a>). To open the
+notebook, click on it in the <code class="docutils literal"><span class="pre">gls</span></code> output, or use the
+<em>notebook/open</em> menu option after starting <code class="docutils literal"><span class="pre">R</span></code>.</p>
<div class="figure align-center" style="width: 85%">
<a class="reference internal image-reference" href="https://github.com/mitotic/graphterm/raw/master/doc-images/gt-r-nb.png"><img alt="https://github.com/mitotic/graphterm/raw/master/doc-images/gt-r-nb.png" src="https://github.com/mitotic/graphterm/raw/master/doc-images/gt-r-nb.png" style="width: 90%;" /></a>
</div>
@@ -186,7 +188,7 @@
</div>
<div class="clearer"></div>
</div>
- <div class="related">
+ <div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
@@ -205,9 +207,9 @@
</ul>
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+ <div class="footer" role="contentinfo">
&copy; Copyright 2012-2014 R. Saravanan.
- Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.2.
+ Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.3.1.
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