diff --git a/notebooks/basic_nodes.ipynb b/notebooks/basic_nodes.ipynb index b8e2627..20cdbfe 100644 --- a/notebooks/basic_nodes.ipynb +++ b/notebooks/basic_nodes.ipynb @@ -170,8 +170,10 @@ "metadata": {}, "outputs": [], "source": [ + "in_file = '/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz'\n", + "\n", "# Specify node inputs\n", - "bet.inputs.in_file = '/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz'\n", + "bet.inputs.in_file = in_file\n", "bet.inputs.out_file = '/output/node_T1w_bet.nii.gz'" ] }, @@ -200,7 +202,7 @@ "from nilearn.plotting import plot_anat\n", "%matplotlib inline\n", "import matplotlib.pyplot as plt\n", - "plot_anat(bet.inputs.in_file, title='BET input', cut_coords=(10,10,10),\n", + "plot_anat(in_file, title='BET input', cut_coords=(10,10,10),\n", " display_mode='ortho', dim=-1, draw_cross=False, annotate=False);\n", "plot_anat(res.outputs.out_file, title='BET output', cut_coords=(10,10,10),\n", " display_mode='ortho', dim=-1, draw_cross=False, annotate=False);"