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aedes_readfidprefs.m
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aedes_readfidprefs.m
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function aedes_readfidprefs()
% AEDES_READFIDPREFS - GUI for editing preferences for AEDES and
% AEDES_DATA_READ for VNMR format files
%
%
% Synopsis:
% aedes_readfidprefs;
%
% Description:
%
% Examples:
%
% See also:
% AEDES, AEDES_DATA_READ
% This function is a part of Aedes - A graphical tool for analyzing
% medical images
%
% Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi>
%
% Department of Physics, Department of Neurobiology
% University of Kuopio, FINLAND
%
% This program may be used under the terms of the GNU General Public
% License version 2.0 as published by the Free Software Foundation
% and appearing in the file LICENSE.TXT included in the packaging of
% this program.
%
% This program is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
% WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
done=false;
msg='';
Dat = [];
%% Try to read defaults from preferences
%% Get defaults for Return
if ispref('Aedes','ReadfidReturn')
if getpref('Aedes','ReadfidReturn')==1
Dat.ReturnKSpace = false;
Dat.ReturnFTData = true;
elseif getpref('Aedes','ReadfidReturn')==2
Dat.ReturnKSpace = true;
Dat.ReturnFTData = false;
elseif getpref('Aedes','ReadfidReturn')==3
Dat.ReturnKSpace = true;
Dat.ReturnFTData = true;
else
Dat.ReturnKSpace = false;
Dat.ReturnFTData = true;
end
else
Dat.ReturnKSpace = false;
Dat.ReturnFTData = true;
setpref('Aedes','ReadfidReturn',1)
end
%% Get defaults for DC correction
if ispref('Aedes','ReadfidDCcorrection')
if getpref('Aedes','ReadfidDCcorrection')
Dat.DCcorrection = true;
else
Dat.DCcorrection = false;
end
else
Dat.DCcorrection = false;
setpref('Aedes','ReadfidDCcorrection',Dat.DCcorrection)
end
%% Get defaults for Zeropadding
if ispref('Aedes','ReadfidZeropadding')
if getpref('Aedes','ReadfidZeropadding')==0
Dat.ZeroPadding = 0;
elseif getpref('Aedes','ReadfidZeropadding')==1
Dat.ZeroPadding = 1;
elseif getpref('Aedes','ReadfidZeropadding')==2
Dat.ZeroPadding = 2;
else
Dat.ZeroPadding = 2;
end
else
Dat.ZeroPadding = 2;
setpref('Aedes','ReadfidZeropadding',Dat.ZeroPadding)
end
%% Get defaults for Sorting
if ispref('Aedes','ReadfidSorting')
if getpref('Aedes','ReadfidSorting')
Dat.Sorting = true;
else
Dat.Sorting = false;
end
else
Dat.Sorting = true;
setpref('Aedes','ReadfidSorting',Dat.Sorting)
end
%% Get defaults for FastRead
if ispref('Aedes','ReadfidFastRead')
if getpref('Aedes','ReadfidFastRead')
Dat.FastDataRead = true;
else
Dat.FastDataRead = false;
end
else
Dat.FastDataRead = true;
setpref('Aedes','ReadfidFastRead',Dat.FastDataRead)
end
%% Get defaults for Precision
if ispref('Aedes','ReadfidPrecision')
if strcmpi(getpref('Aedes','ReadfidPrecision'),'single')
Dat.Precision = 'single';
else
Dat.Precision = 'double';
end
else
Dat.Precision = 'single';
setpref('Aedes','ReadfidPrecision',Dat.Precision)
end
% %% Get defaults for Reorienting EPI images
% if ispref('Aedes','ReadfidReorientEPI')
% Dat.ReorientEPI = getpref('Aedes','ReadfidReorientEPI');
% else
% Dat.ReorientEPI = 'off';
% setpref('Aedes','ReadfidReorientEPI','off')
% end
%% Get defaults for Reorienting images according to procpar.orient
if ispref('Aedes','ReadfidOrientImages')
Dat.OrientImages = getpref('Aedes','ReadfidOrientImages');
else
Dat.OrientImages = 'on';
setpref('Aedes','ReadfidOrientImages','on')
end
%% Get defaults for Removing phase image from EPI data
if ispref('Aedes','ReadfidRemoveEPIphaseIm')
Dat.RemoveEPIphaseIm = getpref('Aedes','ReadfidRemoveEPIphaseIm');
else
Dat.RemoveEPIphaseIm = 'off';
setpref('Aedes','ReadfidRemoveEPIphaseIm','off')
end
%% Get defaults for read function
if ispref('Aedes','VnmrUseOldReadFcn')
if getpref('Aedes','VnmrUseOldReadFcn')
Dat.VnmrUseOldReadFcn = true;
else
Dat.VnmrUseOldReadFcn = false;
end
else
Dat.VnmrUseOldReadFcn = false;
setpref('Aedes','VnmrUseOldReadFcn',Dat.VnmrUseOldReadFcn)
end
%% Load default font and colors
%FigColor=get(0,'DefaultUicontrolBackgroundcolor');
GD=aedes_gui_defaults;
%GD.col.mainfig = FigColor;
fig_h = 300;
fig_w = 270;
fig_location = aedes_dialoglocation([fig_w,fig_h]);
fig_pos = [fig_location(1) fig_location(2) fig_w fig_h];
%% The main figure
fh = figure('position',fig_pos,...
'Units','Pixel', ...
'Name','Edit VNMR preferences', ...
'Numbertitle','off', ...
'Tag','readfid_prefs', ...
'Color',GD.col.mainfig, ...
'Toolbar','none', ...
'Menubar','none', ...
'DockControls','off',...
'renderer','painters',...
'KeyPressFcn','',...
'resize','off',...
'windowstyle','normal');
if ~GD.HG2graphics
set(fh,'DoubleBuffer','on')
end
%% Main Uipanel
uipanel_h = uipanel('parent',fh,...
'Units','pixel',...
'position',[5 40 fig_w-10 fig_h-45],...
'title','Preferences for reading VNMR files',...
'fontweig','bold',...
'backgroundcolor',GD.col.frame);
%% OK button
ok_btn = uicontrol('parent',fh,...
'units','pixel',...
'position',[fig_w-170 5 80 30],...
'string','OK',...
'style','pushbutton',...
'callback',@l_ChangePrefs);
%% Cancel button
tmp=get(ok_btn,'position');
cancel_btn = uicontrol('parent',fh,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+5 tmp(2:4)],...
'string','Cancel',...
'style','pushbutton',...
'callback','delete(gcbf)');
%% Returned data popup
if Dat.ReturnKSpace==true & Dat.ReturnFTData==false
val=2;
elseif Dat.ReturnKSpace==false & Dat.ReturnFTData==true
val=1;
else
val=3;
end
tmp=get(uipanel_h,'position');
return_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(4)-50 100 20],...
'style','text',...
'horizontalalign','left',...
'string','Returned data',...
'backgroundcolor',GD.col.frame,...
'fontsize',GD.text_fs);
tmp=get(return_tx,'position');
return_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'FT-Data','K-Space','FT-Data and K-Space'},...
'value',val);
%% DC correction
if Dat.DCcorrection
val=1;
else
val=2;
end
tmp=get(return_tx,'position');
dc_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],...
'style','text',...
'horizontalalign','left',...
'string','DC correction',...
'backgroundcolor',GD.col.frame);
tmp=get(dc_tx,'position');
dc_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'On','Off'},...
'value',val);
%% Zeropadding
if Dat.ZeroPadding==1
val=1;
elseif Dat.ZeroPadding==0
val=2;
elseif Dat.ZeroPadding==2
val=3;
end
tmp=get(dc_tx,'position');
zeropadding_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],...
'style','text',...
'horizontalalign','left',...
'string','Zeropadding',...
'backgroundcolor',GD.col.frame);
tmp=get(zeropadding_tx,'position');
zeropadding_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'On','Off','Auto'},...
'value',val);
%% Sorting
if Dat.Sorting
val=1;
else
val=2;
end
tmp=get(zeropadding_tx,'position');
sorting_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],...
'style','text',...
'horizontalalign','left',...
'string','Sorting',...
'backgroundcolor',GD.col.frame);
tmp=get(sorting_tx,'position');
sorting_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'On','Off'},...
'value',val);
%% Fast Read
if Dat.FastDataRead
val=1;
else
val=2;
end
tmp=get(sorting_tx,'position');
fastread_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],...
'style','text',...
'horizontalalign','left',...
'string','FastRead',...
'backgroundcolor',GD.col.frame);
tmp=get(fastread_tx,'position');
fastread_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'On','Off'},...
'value',val);
%% Precision
if strcmpi(Dat.Precision,'single')
val=1;
else
val=2;
end
tmp=get(fastread_tx,'position');
precision_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],...
'style','text',...
'horizontalalign','left',...
'string','Precision',...
'backgroundcolor',GD.col.frame);
tmp=get(precision_tx,'position');
precision_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'single','double'},...
'value',val);
%% Default read function
if Dat.VnmrUseOldReadFcn
val=1;
else
val=2;
end
tmp=get(precision_tx,'position');
readfcn_tx = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],...
'style','text',...
'horizontalalign','left',...
'string','Read Fcn',...
'backgroundcolor',GD.col.frame);
tmp=get(readfcn_tx,'position');
readfcn_popup = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],...
'style','popup',...
'backgroundcolor','w',...
'string',{'readfid (old)','readvnmr'},...
'value',val);
%% Reorient images according to procpar.orient
if strcmpi(Dat.OrientImages,'on')
val=1;
else
val=0;
end
tmp=get(readfcn_tx,'position');
orient_images_chbox = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 240 20],...
'style','checkbox',...
'horizontalalign','left',...
'backgroundcolor',GD.col.frame,...
'string','Orient images using PROCPAR.orient',...
'value',val);
%% Remove phase image frim EPI data
if strcmpi(Dat.RemoveEPIphaseIm,'on')
val=1;
else
val=0;
end
tmp=get(orient_images_chbox,'position');
removeepiphaseim_chbox = uicontrol('parent',uipanel_h,...
'units','pixel',...
'position',[10 tmp(2)-tmp(4)-5 240 20],...
'style','checkbox',...
'horizontalalign','left',...
'backgroundcolor',GD.col.frame,...
'string','Remove phase image from EPI data',...
'value',val);
% Store handles to a structure
H.fh = fh;
H.return_h = return_popup;
H.dccorr_h = dc_popup;
H.zeropadding_h = zeropadding_popup;
H.sorting_h = sorting_popup;
H.fastread_h = fastread_popup;
H.precision_h = precision_popup;
H.readfcn_h = readfcn_popup;
H.orient_images_h = orient_images_chbox;
H.removeepiphaseim_h = removeepiphaseim_chbox;
set(ok_btn,'userdata',H)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% OK button press callback
%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function l_ChangePrefs(h,evd)
H = get(h,'userdata');
try
% Get popup values
return_val = get(H.return_h,'value');
dccorr_val = get(H.dccorr_h,'value');
zeropadding_val = get(H.zeropadding_h,'value');
sorting_val = get(H.sorting_h,'value');
fastread_val = get(H.fastread_h,'value');
precision_val = get(H.precision_h,'value');
readfcn_val = get(H.readfcn_h,'value');
orient_images_val = get(H.orient_images_h,'value');
removeepiphaseim_val = get(H.removeepiphaseim_h,'value');
% Set preferences
%% -------------------------------------------------------------------
%% Return value
setpref('Aedes','ReadfidReturn',return_val)
%% DC correction
if dccorr_val==1
setpref('Aedes','ReadfidDCcorrection',true)
else
setpref('Aedes','ReadfidDCcorrection',false)
end
%% Zeropadding
if zeropadding_val==1
setpref('Aedes','ReadfidZeropadding',1)
elseif zeropadding_val==2
setpref('Aedes','ReadfidZeropadding',0)
else
setpref('Aedes','ReadfidZeropadding',2)
end
%% Sorting
if sorting_val==1
setpref('Aedes','ReadfidSorting',true)
else
setpref('Aedes','ReadfidSorting',false)
end
%% FastRead
if fastread_val==1
setpref('Aedes','ReadfidFastRead',true)
else
setpref('Aedes','ReadfidFastRead',false)
end
%% Precision
if precision_val==1
setpref('Aedes','ReadfidPrecision','single')
else
setpref('Aedes','ReadfidPrecision','double')
end
%% Read fcn
if readfcn_val==1
setpref('Aedes','VnmrUseOldReadFcn',true)
else
setpref('Aedes','VnmrUseOldReadFcn',false)
end
%% Orient images
if orient_images_val==1
setpref('Aedes','ReadfidOrientImages','on')
else
setpref('Aedes','ReadfidOrientImages','off')
end
%% Remove phase image from EPI
if removeepiphaseim_val==1
setpref('Aedes','ReadfidRemoveEPIphaseIm','on')
else
setpref('Aedes','ReadfidRemoveEPIphaseIm','off')
end
catch
hh=errordlg('An error occurred! Could not save preferences.',...
'Could not save preferences','modal');
end
delete(H.fh)