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| function aedes_readfidprefs() | |
| % AEDES_READFIDPREFS - GUI for editing preferences for AEDES and | |
| % AEDES_DATA_READ for VNMR format files | |
| % | |
| % | |
| % Synopsis: | |
| % aedes_readfidprefs; | |
| % | |
| % Description: | |
| % | |
| % Examples: | |
| % | |
| % See also: | |
| % AEDES, AEDES_DATA_READ | |
| % This function is a part of Aedes - A graphical tool for analyzing | |
| % medical images | |
| % | |
| % Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi> | |
| % | |
| % Department of Physics, Department of Neurobiology | |
| % University of Kuopio, FINLAND | |
| % | |
| % This program may be used under the terms of the GNU General Public | |
| % License version 2.0 as published by the Free Software Foundation | |
| % and appearing in the file LICENSE.TXT included in the packaging of | |
| % this program. | |
| % | |
| % This program is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE | |
| % WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. | |
| done=false; | |
| msg=''; | |
| Dat = []; | |
| %% Try to read defaults from preferences | |
| %% Get defaults for Return | |
| if ispref('Aedes','ReadfidReturn') | |
| if getpref('Aedes','ReadfidReturn')==1 | |
| Dat.ReturnKSpace = false; | |
| Dat.ReturnFTData = true; | |
| elseif getpref('Aedes','ReadfidReturn')==2 | |
| Dat.ReturnKSpace = true; | |
| Dat.ReturnFTData = false; | |
| elseif getpref('Aedes','ReadfidReturn')==3 | |
| Dat.ReturnKSpace = true; | |
| Dat.ReturnFTData = true; | |
| else | |
| Dat.ReturnKSpace = false; | |
| Dat.ReturnFTData = true; | |
| end | |
| else | |
| Dat.ReturnKSpace = false; | |
| Dat.ReturnFTData = true; | |
| setpref('Aedes','ReadfidReturn',1) | |
| end | |
| %% Get defaults for DC correction | |
| if ispref('Aedes','ReadfidDCcorrection') | |
| if getpref('Aedes','ReadfidDCcorrection') | |
| Dat.DCcorrection = true; | |
| else | |
| Dat.DCcorrection = false; | |
| end | |
| else | |
| Dat.DCcorrection = false; | |
| setpref('Aedes','ReadfidDCcorrection',Dat.DCcorrection) | |
| end | |
| %% Get defaults for Zeropadding | |
| if ispref('Aedes','ReadfidZeropadding') | |
| if getpref('Aedes','ReadfidZeropadding')==0 | |
| Dat.ZeroPadding = 0; | |
| elseif getpref('Aedes','ReadfidZeropadding')==1 | |
| Dat.ZeroPadding = 1; | |
| elseif getpref('Aedes','ReadfidZeropadding')==2 | |
| Dat.ZeroPadding = 2; | |
| else | |
| Dat.ZeroPadding = 2; | |
| end | |
| else | |
| Dat.ZeroPadding = 2; | |
| setpref('Aedes','ReadfidZeropadding',Dat.ZeroPadding) | |
| end | |
| %% Get defaults for Sorting | |
| if ispref('Aedes','ReadfidSorting') | |
| if getpref('Aedes','ReadfidSorting') | |
| Dat.Sorting = true; | |
| else | |
| Dat.Sorting = false; | |
| end | |
| else | |
| Dat.Sorting = true; | |
| setpref('Aedes','ReadfidSorting',Dat.Sorting) | |
| end | |
| %% Get defaults for FastRead | |
| if ispref('Aedes','ReadfidFastRead') | |
| if getpref('Aedes','ReadfidFastRead') | |
| Dat.FastDataRead = true; | |
| else | |
| Dat.FastDataRead = false; | |
| end | |
| else | |
| Dat.FastDataRead = true; | |
| setpref('Aedes','ReadfidFastRead',Dat.FastDataRead) | |
| end | |
| %% Get defaults for Precision | |
| if ispref('Aedes','ReadfidPrecision') | |
| if strcmpi(getpref('Aedes','ReadfidPrecision'),'single') | |
| Dat.Precision = 'single'; | |
| else | |
| Dat.Precision = 'double'; | |
| end | |
| else | |
| Dat.Precision = 'single'; | |
| setpref('Aedes','ReadfidPrecision',Dat.Precision) | |
| end | |
| % %% Get defaults for Reorienting EPI images | |
| % if ispref('Aedes','ReadfidReorientEPI') | |
| % Dat.ReorientEPI = getpref('Aedes','ReadfidReorientEPI'); | |
| % else | |
| % Dat.ReorientEPI = 'off'; | |
| % setpref('Aedes','ReadfidReorientEPI','off') | |
| % end | |
| %% Get defaults for Reorienting images according to procpar.orient | |
| if ispref('Aedes','ReadfidOrientImages') | |
| Dat.OrientImages = getpref('Aedes','ReadfidOrientImages'); | |
| else | |
| Dat.OrientImages = 'on'; | |
| setpref('Aedes','ReadfidOrientImages','on') | |
| end | |
| %% Get defaults for Removing phase image from EPI data | |
| if ispref('Aedes','ReadfidRemoveEPIphaseIm') | |
| Dat.RemoveEPIphaseIm = getpref('Aedes','ReadfidRemoveEPIphaseIm'); | |
| else | |
| Dat.RemoveEPIphaseIm = 'off'; | |
| setpref('Aedes','ReadfidRemoveEPIphaseIm','off') | |
| end | |
| %% Get defaults for read function | |
| if ispref('Aedes','VnmrUseOldReadFcn') | |
| if getpref('Aedes','VnmrUseOldReadFcn') | |
| Dat.VnmrUseOldReadFcn = true; | |
| else | |
| Dat.VnmrUseOldReadFcn = false; | |
| end | |
| else | |
| Dat.VnmrUseOldReadFcn = false; | |
| setpref('Aedes','VnmrUseOldReadFcn',Dat.VnmrUseOldReadFcn) | |
| end | |
| %% Load default font and colors | |
| %FigColor=get(0,'DefaultUicontrolBackgroundcolor'); | |
| GD=aedes_gui_defaults; | |
| %GD.col.mainfig = FigColor; | |
| fig_h = 300; | |
| fig_w = 270; | |
| fig_location = aedes_dialoglocation([fig_w,fig_h]); | |
| fig_pos = [fig_location(1) fig_location(2) fig_w fig_h]; | |
| %% The main figure | |
| fh = figure('position',fig_pos,... | |
| 'Units','Pixel', ... | |
| 'Name','Edit VNMR preferences', ... | |
| 'Numbertitle','off', ... | |
| 'Tag','readfid_prefs', ... | |
| 'Color',GD.col.mainfig, ... | |
| 'Toolbar','none', ... | |
| 'Menubar','none', ... | |
| 'DockControls','off',... | |
| 'renderer','painters',... | |
| 'KeyPressFcn','',... | |
| 'resize','off',... | |
| 'windowstyle','normal'); | |
| if ~GD.HG2graphics | |
| set(fh,'DoubleBuffer','on') | |
| end | |
| %% Main Uipanel | |
| uipanel_h = uipanel('parent',fh,... | |
| 'Units','pixel',... | |
| 'position',[5 40 fig_w-10 fig_h-45],... | |
| 'title','Preferences for reading VNMR files',... | |
| 'fontweig','bold',... | |
| 'backgroundcolor',GD.col.frame); | |
| %% OK button | |
| ok_btn = uicontrol('parent',fh,... | |
| 'units','pixel',... | |
| 'position',[fig_w-170 5 80 30],... | |
| 'string','OK',... | |
| 'style','pushbutton',... | |
| 'callback',@l_ChangePrefs); | |
| %% Cancel button | |
| tmp=get(ok_btn,'position'); | |
| cancel_btn = uicontrol('parent',fh,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+5 tmp(2:4)],... | |
| 'string','Cancel',... | |
| 'style','pushbutton',... | |
| 'callback','delete(gcbf)'); | |
| %% Returned data popup | |
| if Dat.ReturnKSpace==true & Dat.ReturnFTData==false | |
| val=2; | |
| elseif Dat.ReturnKSpace==false & Dat.ReturnFTData==true | |
| val=1; | |
| else | |
| val=3; | |
| end | |
| tmp=get(uipanel_h,'position'); | |
| return_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(4)-50 100 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','Returned data',... | |
| 'backgroundcolor',GD.col.frame,... | |
| 'fontsize',GD.text_fs); | |
| tmp=get(return_tx,'position'); | |
| return_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'FT-Data','K-Space','FT-Data and K-Space'},... | |
| 'value',val); | |
| %% DC correction | |
| if Dat.DCcorrection | |
| val=1; | |
| else | |
| val=2; | |
| end | |
| tmp=get(return_tx,'position'); | |
| dc_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','DC correction',... | |
| 'backgroundcolor',GD.col.frame); | |
| tmp=get(dc_tx,'position'); | |
| dc_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'On','Off'},... | |
| 'value',val); | |
| %% Zeropadding | |
| if Dat.ZeroPadding==1 | |
| val=1; | |
| elseif Dat.ZeroPadding==0 | |
| val=2; | |
| elseif Dat.ZeroPadding==2 | |
| val=3; | |
| end | |
| tmp=get(dc_tx,'position'); | |
| zeropadding_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','Zeropadding',... | |
| 'backgroundcolor',GD.col.frame); | |
| tmp=get(zeropadding_tx,'position'); | |
| zeropadding_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'On','Off','Auto'},... | |
| 'value',val); | |
| %% Sorting | |
| if Dat.Sorting | |
| val=1; | |
| else | |
| val=2; | |
| end | |
| tmp=get(zeropadding_tx,'position'); | |
| sorting_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','Sorting',... | |
| 'backgroundcolor',GD.col.frame); | |
| tmp=get(sorting_tx,'position'); | |
| sorting_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'On','Off'},... | |
| 'value',val); | |
| %% Fast Read | |
| if Dat.FastDataRead | |
| val=1; | |
| else | |
| val=2; | |
| end | |
| tmp=get(sorting_tx,'position'); | |
| fastread_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','FastRead',... | |
| 'backgroundcolor',GD.col.frame); | |
| tmp=get(fastread_tx,'position'); | |
| fastread_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'On','Off'},... | |
| 'value',val); | |
| %% Precision | |
| if strcmpi(Dat.Precision,'single') | |
| val=1; | |
| else | |
| val=2; | |
| end | |
| tmp=get(fastread_tx,'position'); | |
| precision_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','Precision',... | |
| 'backgroundcolor',GD.col.frame); | |
| tmp=get(precision_tx,'position'); | |
| precision_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'single','double'},... | |
| 'value',val); | |
| %% Default read function | |
| if Dat.VnmrUseOldReadFcn | |
| val=1; | |
| else | |
| val=2; | |
| end | |
| tmp=get(precision_tx,'position'); | |
| readfcn_tx = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 tmp(3) 20],... | |
| 'style','text',... | |
| 'horizontalalign','left',... | |
| 'string','Read Fcn',... | |
| 'backgroundcolor',GD.col.frame); | |
| tmp=get(readfcn_tx,'position'); | |
| readfcn_popup = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[tmp(1)+tmp(3)+1 tmp(2)+3 140 20],... | |
| 'style','popup',... | |
| 'backgroundcolor','w',... | |
| 'string',{'readfid (old)','readvnmr'},... | |
| 'value',val); | |
| %% Reorient images according to procpar.orient | |
| if strcmpi(Dat.OrientImages,'on') | |
| val=1; | |
| else | |
| val=0; | |
| end | |
| tmp=get(readfcn_tx,'position'); | |
| orient_images_chbox = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 240 20],... | |
| 'style','checkbox',... | |
| 'horizontalalign','left',... | |
| 'backgroundcolor',GD.col.frame,... | |
| 'string','Orient images using PROCPAR.orient',... | |
| 'value',val); | |
| %% Remove phase image frim EPI data | |
| if strcmpi(Dat.RemoveEPIphaseIm,'on') | |
| val=1; | |
| else | |
| val=0; | |
| end | |
| tmp=get(orient_images_chbox,'position'); | |
| removeepiphaseim_chbox = uicontrol('parent',uipanel_h,... | |
| 'units','pixel',... | |
| 'position',[10 tmp(2)-tmp(4)-5 240 20],... | |
| 'style','checkbox',... | |
| 'horizontalalign','left',... | |
| 'backgroundcolor',GD.col.frame,... | |
| 'string','Remove phase image from EPI data',... | |
| 'value',val); | |
| % Store handles to a structure | |
| H.fh = fh; | |
| H.return_h = return_popup; | |
| H.dccorr_h = dc_popup; | |
| H.zeropadding_h = zeropadding_popup; | |
| H.sorting_h = sorting_popup; | |
| H.fastread_h = fastread_popup; | |
| H.precision_h = precision_popup; | |
| H.readfcn_h = readfcn_popup; | |
| H.orient_images_h = orient_images_chbox; | |
| H.removeepiphaseim_h = removeepiphaseim_chbox; | |
| set(ok_btn,'userdata',H) | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| % OK button press callback | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%% | |
| function l_ChangePrefs(h,evd) | |
| H = get(h,'userdata'); | |
| try | |
| % Get popup values | |
| return_val = get(H.return_h,'value'); | |
| dccorr_val = get(H.dccorr_h,'value'); | |
| zeropadding_val = get(H.zeropadding_h,'value'); | |
| sorting_val = get(H.sorting_h,'value'); | |
| fastread_val = get(H.fastread_h,'value'); | |
| precision_val = get(H.precision_h,'value'); | |
| readfcn_val = get(H.readfcn_h,'value'); | |
| orient_images_val = get(H.orient_images_h,'value'); | |
| removeepiphaseim_val = get(H.removeepiphaseim_h,'value'); | |
| % Set preferences | |
| %% ------------------------------------------------------------------- | |
| %% Return value | |
| setpref('Aedes','ReadfidReturn',return_val) | |
| %% DC correction | |
| if dccorr_val==1 | |
| setpref('Aedes','ReadfidDCcorrection',true) | |
| else | |
| setpref('Aedes','ReadfidDCcorrection',false) | |
| end | |
| %% Zeropadding | |
| if zeropadding_val==1 | |
| setpref('Aedes','ReadfidZeropadding',1) | |
| elseif zeropadding_val==2 | |
| setpref('Aedes','ReadfidZeropadding',0) | |
| else | |
| setpref('Aedes','ReadfidZeropadding',2) | |
| end | |
| %% Sorting | |
| if sorting_val==1 | |
| setpref('Aedes','ReadfidSorting',true) | |
| else | |
| setpref('Aedes','ReadfidSorting',false) | |
| end | |
| %% FastRead | |
| if fastread_val==1 | |
| setpref('Aedes','ReadfidFastRead',true) | |
| else | |
| setpref('Aedes','ReadfidFastRead',false) | |
| end | |
| %% Precision | |
| if precision_val==1 | |
| setpref('Aedes','ReadfidPrecision','single') | |
| else | |
| setpref('Aedes','ReadfidPrecision','double') | |
| end | |
| %% Read fcn | |
| if readfcn_val==1 | |
| setpref('Aedes','VnmrUseOldReadFcn',true) | |
| else | |
| setpref('Aedes','VnmrUseOldReadFcn',false) | |
| end | |
| %% Orient images | |
| if orient_images_val==1 | |
| setpref('Aedes','ReadfidOrientImages','on') | |
| else | |
| setpref('Aedes','ReadfidOrientImages','off') | |
| end | |
| %% Remove phase image from EPI | |
| if removeepiphaseim_val==1 | |
| setpref('Aedes','ReadfidRemoveEPIphaseIm','on') | |
| else | |
| setpref('Aedes','ReadfidRemoveEPIphaseIm','off') | |
| end | |
| catch | |
| hh=errordlg('An error occurred! Could not save preferences.',... | |
| 'Could not save preferences','modal'); | |
| end | |
| delete(H.fh) |