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| function ResTable = aedes_res2table(Res,varargin) | |
| % AEDES_RES2TABLE - | |
| % | |
| % | |
| % Synopsis: | |
| % | |
| % Description: | |
| % | |
| % Examples: | |
| % | |
| % See also: | |
| % | |
| % This function is a part of Aedes - A graphical tool for analyzing | |
| % medical images | |
| % | |
| % Copyright (C) 2006 Juha-Pekka Niskanen <Juha-Pekka.Niskanen@uku.fi> | |
| % | |
| % Department of Physics, Department of Neurobiology | |
| % University of Kuopio, FINLAND | |
| % | |
| % This program may be used under the terms of the GNU General Public | |
| % License version 2.0 as published by the Free Software Foundation | |
| % and appearing in the file LICENSE.TXT included in the packaging of | |
| % this program. | |
| % | |
| % This program is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE | |
| % WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. | |
| % Defaults | |
| SortByRoi = false; % Sort by ROIs or FileNames. | |
| DecSep = ','; | |
| NumDec = 3; | |
| ResTable = {}; | |
| ResFileName = ''; | |
| dirs = [0 1 2 3 4]; % By default show all directions (1,2,3,4) and total (0) | |
| % Check Res-structure | |
| if ~isstruct(Res) && ~isfield(Res,'Stat') && ... | |
| ~isfield(Res,'FileInfo') && ~isfield(Res,'DateTime') | |
| error('Invalid Res-structure') | |
| end | |
| % Parse varargin | |
| for ii=1:2:length(varargin) | |
| switch lower(varargin{ii}) | |
| case 'sortbyroi' | |
| SortByRoi = varargin{ii+1}; | |
| case 'decsep' | |
| DecSep = varargin{ii+1}; | |
| case 'numdec' | |
| NumDec = varargin{ii+1}; | |
| case 'resfilename' | |
| ResFileName = varargin{ii+1}; | |
| case {'directions','dirs'} | |
| tmp = varargin{ii+1}; | |
| dirs = find(ismember('TXYZV',tmp))-1; | |
| otherwise | |
| error('Unknown parameter %s',varargin{ii}) | |
| end | |
| end | |
| FileInfo = Res.FileInfo; | |
| DateTime = Res.DateTime; | |
| nRois = length(Res.Stat); | |
| % Ensure backward compatibility | |
| if ~isfield(Res.Stat(1),'Sum') | |
| for ii=1:length(Res.Stat) | |
| Res.Stat(ii).Sum = NaN(1,length(Res.Stat(ii).Mean)); | |
| if isfield(Res.Stat(1),'XD') | |
| Res.Stat(ii).XD.Sum = NaN(1,length(Res.Stat(ii).XD.Mean)); | |
| Res.Stat(ii).YD.Sum = NaN(1,length(Res.Stat(ii).YD.Mean)); | |
| Res.Stat(ii).ZD.Sum = NaN(1,length(Res.Stat(ii).ZD.Mean)); | |
| Res.Stat(ii).VD.Sum = NaN(1,length(Res.Stat(ii).VD.Mean)); | |
| end | |
| end | |
| end | |
| % Allocate space for ResTable | |
| if Res.Stat(1).isMixed | |
| if SortByRoi | |
| ResTable=cell(1,7); | |
| else | |
| ResTable=cell(1,8); | |
| end | |
| else | |
| %ResTable=cell(7+nRois+5*3+nRois*3*length(Res.Stat(1).Mean),6); | |
| ResTable=cell(1,7); | |
| end | |
| %size(ResTable) | |
| % Write date, time and Res filename | |
| ResTable{1,1} = ResFileName; % Res-file name | |
| ResTable{2,1} = DateTime; % | |
| % concatenate file and path names | |
| fnames={}; | |
| for ii=1:length(Res.FileInfo.DataFileName) | |
| fnames{ii} = [Res.FileInfo.DataPathName{ii},Res.FileInfo.DataFileName{ii}]; | |
| end | |
| % $$$ fnames=cellstr([char(Res.FileInfo.DataPathName) ... | |
| % $$$ char(Res.FileInfo.DataFileName)]); | |
| %% Parse Res structure | |
| start_ind = 3; | |
| % Parse mixed type results | |
| if Res.Stat(1).isMixed | |
| for ii=1:nRois | |
| if SortByRoi | |
| start_ind = start_ind+2; | |
| mtrx=[Res.Stat(ii).Mean(:) Res.Stat(ii).Std(:) Res.Stat(ii).Sum(:) ... | |
| Res.Stat(ii).Min(:) Res.Stat(ii).Max(:) ... | |
| Res.Stat(ii).PixelCount(:)]; | |
| ResTable{start_ind,1}=['ROI: ',Res.Stat(ii).Label]; | |
| ResTable(start_ind+1:start_ind+2,:) = {'Filename','Mean','STD','Sum','Min','Max',... | |
| 'Pixel count';'------','------','------','------','------',... | |
| '------','------'}; | |
| ResTable(start_ind+3:start_ind+3+length(Res.Stat(ii).Mean)-1,1) = fnames; | |
| ResTable(start_ind+3:start_ind+3+length(Res.Stat(ii).Mean)-1,2:end-1) = ... | |
| strrep(aedes_cellsprintf(['%.' num2str(NumDec) 'f'],mtrx(:,1:end-1)),'.', ... | |
| DecSep); | |
| ResTable(start_ind+3:start_ind+3+length(Res.Stat(ii).Mean)-1,end) = ... | |
| strrep(aedes_cellsprintf(['%.0f'],mtrx(:,end)),'.', ... | |
| DecSep); | |
| start_ind = start_ind+3+size(mtrx,1); | |
| else | |
| mtrx=[Res.Stat(ii).Mean(:) Res.Stat(ii).Std(:) Res.Stat(ii).Sum(:) Res.Stat(ii).Min(:) Res.Stat(ii).Max(:) ... | |
| Res.Stat(ii).PixelCount(:)]; | |
| ResTable(start_ind+1:start_ind+2,:) = {'Filename','ROI','Mean','STD','Sum','Min','Max',... | |
| 'Pixel count';'------','------','------','------','------',... | |
| '------','------','------'}; | |
| ResTable(start_ind+2+ii:nRois:start_ind+3+nRois*length(Res.Stat(ii).Mean)-1,1) ... | |
| = fnames; | |
| ResTable(start_ind+2+ii:nRois:start_ind+3+nRois*length(Res.Stat(ii).Mean)-1,2) ... | |
| = {Res.Stat(ii).Label}; | |
| ResTable(start_ind+2+ii:nRois:start_ind+3+nRois*length(Res.Stat(ii).Mean)-1,3:end-1) ... | |
| = strrep(aedes_cellsprintf(['%.' num2str(NumDec) 'f'],mtrx(:,1:end-1)),'.', ... | |
| DecSep); | |
| ResTable(start_ind+2+ii:nRois:start_ind+3+nRois*length(Res.Stat(ii).Mean)-1,end) = ... | |
| strrep(aedes_cellsprintf(['%.0f'],mtrx(:,end)),'.', ... | |
| DecSep); | |
| end | |
| end | |
| else % Parse normal type results | |
| % Construct totals | |
| if any(dirs==0) | |
| ResTable{5,1} = 'TOTAL'; | |
| ResTable(6:7,:) = {'ROI','Mean','STD','Sum','Min','Max','Pixel count';... | |
| '------','------','------','------',... | |
| '------','------','------'}; | |
| RowInd = 8; | |
| for kk=1:nRois | |
| totals = [Res.Stat(kk).Mean,Res.Stat(kk).Std,Res.Stat(kk).Sum,Res.Stat(kk).Min,... | |
| Res.Stat(kk).Max]; | |
| ResTable{RowInd,1} = Res.Stat(kk).Label; | |
| ResTable(RowInd,2:6) = strrep(aedes_cellsprintf(['%.' num2str(NumDec) 'f'],... | |
| totals),'.',DecSep); | |
| ResTable(RowInd,7) = strrep(aedes_cellsprintf('%.0f',Res.Stat(kk).PixelCount),'.',... | |
| DecSep); | |
| RowInd=RowInd+1; | |
| end | |
| else | |
| RowInd = 3; | |
| end | |
| dir_str = {'X-Direction','XD';... | |
| 'Y-Direction','YD';... | |
| 'Z-Direction','ZD';... | |
| 'V-Direction','VD'}; | |
| for kk=dirs | |
| if kk==0 | |
| continue | |
| end | |
| % Construct X, Y, and Z directions | |
| RowInd = RowInd+2; | |
| D = dir_str{kk,2}; | |
| ResTable{RowInd,1} = dir_str{kk,1}; | |
| ResTable(RowInd+1:RowInd+2,:) = {'ROI','Mean','STD','Sum','Min','Max','Pixel count';... | |
| '------','------','------','------',... | |
| '------','------','------'}; | |
| RowInd=RowInd+3; | |
| for ii=1:nRois | |
| totals = [Res.Stat(ii).(D).Mean(:),Res.Stat(ii).(D).Std(:),Res.Stat(ii).(D).Sum(:),... | |
| Res.Stat(ii).(D).Min(:),... | |
| Res.Stat(ii).(D).Max(:)]; | |
| ResTable(RowInd:RowInd+length(totals(:,1))-1,1) = ... | |
| cellstr(repmat(Res.Stat(ii).Label,length(totals(:,1)),1)); | |
| ResTable(RowInd:RowInd+length(totals(:,1))-1,2:end-1) = ... | |
| strrep(aedes_cellsprintf(['%.' num2str(NumDec) 'f'],... | |
| totals),'.',DecSep); | |
| ResTable(RowInd:RowInd+length(totals(:,1))-1,end) = ... | |
| strrep(aedes_cellsprintf('%.0f',Res.Stat(ii).(D).PixelCount),'.',... | |
| DecSep); | |
| RowInd = RowInd+length(totals(:,1)); | |
| end | |
| end | |
| end | |
| vers = aedes_getmatlabversion; | |
| if vers>=7.06 | |
| % Convert empty matrices to empty strings | |
| ResTable(cellfun('isempty',ResTable))={''}; | |
| end |