mjsteinbaugh

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Michael Steinbaugh mjsteinbaugh

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Director of Translational Science at Redona Therapeutics

128 followers · 561 following

@acidgenomics / @redonatx
Cambridge, MA, USA
03:39 (UTC -04:00)
https://mike.steinbaugh.com
@mjsteinbaugh

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Pinned

acidgenomics/koopa Public

Shell bootloader for bioinformatics.

Shell 8 1
acidgenomics/dotfiles Public

Configuration files shared between machines.

Vim Script 2
hbc/bcbioRNASeq Public

R package for bcbio RNA-seq analysis.

R 49 21
hbc/bcbioSingleCell Public

R package for bcbio single-cell RNA-seq analysis.

R 31 8

8,597 contributions in the last year

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Activity overview

Contributed to acidgenomics/koopa, acidgenomics/dotfiles, acidgenomics/r-cellosaurus and 59 other repositories

Contribution activity

March 2023

Created 536 commits in 10 repositories

Created 1 repository

mjsteinbaugh/umis Python Mar 14

Created a pull request in vals/umis that received 2 comments

Ensure version is current (1.0.9)

+2 −2 • 2 comments

Opened 43 other pull requests in 1 repository

acidgenomics/koopa 43 merged

Harden our zsh permission check Mar 24
Ensure we clean up tmp files Mar 24
Add install support for quarto Mar 24
Use mirror for pkg-config Mar 24
Change GNU FTP mirror to MIT Mar 24
Relax build checks for Docker reprex Mar 24
Increase verbosity of CMake builds Mar 24
2023-03-24 updates Mar 24
Sudo fixes Mar 23
Ensure we enforce sudo before script runs Mar 23
Relax sudo checks for homebrew Mar 23
Need to harden realpath in main koopa script as well Mar 23
Harden realpath across systems Mar 23
2023-03-23 updates Mar 23
Update venv version pinnings Mar 23
2023-03-23 updates Mar 23
Update dotfiles Mar 22
2023-03-22 updates Mar 22
2023-03-21 updates Mar 21
Latch Pod fixes Mar 21
Updates for Latch Pods Mar 21
System R configuration improvements Mar 21
Improve prompt config for root user Mar 21
Fix variable names Mar 21
Verbose mode fixes Mar 21
Some pull requests not shown.

Reviewed 54 pull requests in 1 repository

bioconda/bioconda-recipes 25 pull requests

Update xs-sim to 2 Mar 22
Update medaka to 1.7.3 Mar 22
Update guidemaker to 0.3.6 Mar 22
Update scoop to 0.7.2.0 Mar 22
Update micom to 0.32.4 Mar 22
Update salty to 1.0.5 Mar 22
Update oakvar to 2.8.35 Mar 22
Update hitac to 2.0.28 Mar 22
Update pycrac to 1.5.2 Mar 22
Update blosum to 2.0.2 Mar 22
Update htseq-clip to 2.18.2b0 Mar 22
Update medicc2 to 0.9.1 Mar 22
Update proteinortho to 6.2.1 Mar 22
Update ivar to 1.4.1 Mar 22
Update ncbi-datasets-pylib to 14.18.0 Mar 22
Update midsv to 0.9.5 Mar 22
Update last to 1453 Mar 22
Update pomoxis to 0.3.12 Mar 17
Update kraken build Mar 17
Update strobealign to 0.9.0 Mar 17
Update bifrost to 1.2.0 Mar 17
Update diapysef to 1.0.8 Mar 17
Update gadma to 2.0.0rc23 Mar 17
Update parascopy to 1.10.6 Mar 17
Update gcluster to 2.06 Mar 17
Some pull request reviews not shown.

Created an issue in mamba-org/mamba that received 3 comments

mamba 2023.03.22 / 1.4.0 hitting ninja build error on Ubuntu 20

Troubleshooting docs My problem is not solved in the Troubleshooting docs Search tried in issue tracker ninja Latest version of Mamba My probl…

2 tasks done

• 3 comments

29 contributions in private repositories Mar 2 – Mar 24