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readme update

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1 parent 9ede15d commit 91cecbeb27b4fb0d46149077112447e4dd0fb76b @mkorpar committed Jul 8, 2012
Showing with 15 additions and 1 deletion.
  1. +12 −1 README
  2. +3 −0 src/sw_k_solve.c
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13 README
@@ -102,7 +102,7 @@ OPTIONS:
options are not used
--mismatch <float>
(optional)
- (default: -3.0)
+ (default: -3.0)
mismacth value
if --match and --mismatch are given, --matrix-table and --matrix-file
options are not used
@@ -120,6 +120,17 @@ OPTIONS:
score threshold
program will output not just the max score and its reconstruction, but
all the scores which are above the given threshold
+ if given --solve flag is ignored
+ if given --global flag is ignored
+ if given --shotgun flag is ignored
+ --kbest <int>
+ (optional)
+ (default: 1)
+ compute k best scores
+ program will output the k best disjunct solutions
+ if given --solve flag is ignored
+ if given --global flag is ignored
+ if given --shotgun flag is ignored
--min-hits <int>
(optional)
(default: 0)
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3 src/sw_k_solve.c
@@ -55,6 +55,9 @@ extern SWData* swKSolve(Chain* rowChain, Chain* columnChain, SWPrefs* swPrefs) {
}
}
+ printf("error: not yet implemented\n");
+ exit(-1);
+
SWData* swData = swSolve(rowChain, columnChain, swPrefs);
swReconstruct(&swData, rowChain, columnChain, swPrefs);

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