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matrices
templates
chain.c
chain.h
chain_base.c
chain_base.h
main.c
matcher.c
matcher.h
nw_solve.c
nw_solve.h
nw_solve_gpu.c
nw_solve_gpu.h
nw_solve_gpu_mm.cu
nw_solve_gpu_mm.h
nw_solve_gpu_sm.cu
nw_solve_gpu_sm.h
nw_solve_shotgun_gpu_mm.cu
nw_solve_shotgun_gpu_mm.h
nw_solve_shotgun_gpu_sm.cu
nw_solve_shotgun_gpu_sm.h
sw.cu
sw.h
sw_complete_dual_gpu.c
sw_complete_dual_gpu.h
sw_complete_dual_gpu_mm.cu
sw_complete_dual_gpu_mm.h
sw_complete_dual_gpu_sm.cu
sw_complete_dual_gpu_sm.h
sw_data.c
sw_data.h
sw_find.c
sw_find.h
sw_find_gpu.c
sw_find_gpu.h
sw_find_gpu_mm.cu
sw_find_gpu_mm.h
sw_find_gpu_sm.cu
sw_find_gpu_sm.h
sw_hirschberg_data.c
sw_hirschberg_data.h
sw_k_solve.c
sw_k_solve.h
sw_nw_find_solve_cpu.c
sw_nw_find_solve_cpu.h
sw_prefs.cu
sw_prefs.h
sw_reconstruct.c
sw_reconstruct.h
sw_reconstruct_cpu.c
sw_reconstruct_cpu.h
sw_reconstruct_gpu.c
sw_reconstruct_gpu.h
sw_reconstruct_gpu_mm.cu
sw_reconstruct_gpu_mm.h
sw_reconstruct_gpu_sm.cu
sw_reconstruct_gpu_sm.h
sw_result.c
sw_result.h
sw_solve.c
sw_solve.h
sw_solve_gpu.c
sw_solve_gpu.h
sw_solve_gpu_mm.cu
sw_solve_gpu_mm.h
sw_solve_gpu_sm.cu
sw_solve_gpu_sm.h
sw_solve_shotgun_gpu_mm.cu
sw_solve_shotgun_gpu_mm.h
sw_solve_shotgun_gpu_sm.cu
sw_solve_shotgun_gpu_sm.h
utils.cu
utils.h
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