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| # cde.options v1 (do not alter this first line!) | |
| # These directories often contain pseudo-files that shouldn't be tracked | |
| ignore_prefix=/dev/ | |
| ignore_exact=/dev | |
| ignore_prefix=/proc/ | |
| ignore_exact=/proc | |
| ignore_prefix=/sys/ | |
| ignore_exact=/sys | |
| ignore_prefix=/var/cache/ | |
| ignore_prefix=/var/lock/ | |
| ignore_prefix=/var/log/ | |
| ignore_prefix=/var/run/ | |
| ignore_prefix=/var/tmp/ | |
| ignore_prefix=/tmp/ | |
| ignore_exact=/tmp | |
| # un-comment the entries below if you think they might help your app: | |
| #ignore_exact=/etc/ld.so.cache | |
| #ignore_exact=/etc/ld.so.preload | |
| #ignore_exact=/etc/ld.so.nohwcap | |
| # Ignore .Xauthority to allow X Windows programs to work | |
| ignore_substr=.Xauthority | |
| # Ignore so that networking can work properly | |
| ignore_exact=/etc/resolv.conf | |
| # These files might be useful to ignore along with /etc/resolv.conf | |
| # (un-comment if you want to try them) | |
| #ignore_exact=/etc/host.conf | |
| #ignore_exact=/etc/hosts | |
| #ignore_exact=/etc/nsswitch.conf | |
| #ignore_exact=/etc/gai.conf | |
| # Access the target machine's password files: | |
| # (some programs like texmacs need these lines to be commented-out, | |
| # since they try to use home directory paths within the passwd file, | |
| # and those paths might not exist within the package.) | |
| ignore_prefix=/etc/passwd | |
| ignore_prefix=/etc/shadow | |
| # These environment vars might lead to 'overfitting' and hinder portability | |
| ignore_environment_var=DBUS_SESSION_BUS_ADDRESS | |
| ignore_environment_var=ORBIT_SOCKETDIR | |
| ignore_environment_var=SESSION_MANAGER | |
| ignore_environment_var=XAUTHORITY | |
| ignore_environment_var=DISPLAY | |
| # For PhyloCSF: allow the dispatch script in our package to set PHYLOCSF_BASE | |
| # so that the parameters and examples can reside at the top level rather than | |
| # buried deep in cde-package/ | |
| ignore_environment_var=PHYLOCSF_BASE | |
| ignore_prefix=/home/mlin/src/PhyloCSF/PhyloCSF_Examples | |
| ignore_prefix=/home/mlin/src/PhyloCSF/PhyloCSF_Parameters |