From 11c6c2a6a7e9c74429f3e247d933282549163ed7 Mon Sep 17 00:00:00 2001 From: Mike Lin Date: Sat, 5 May 2012 12:41:44 -0700 Subject: [PATCH] Makefile minor tweaks --- Makefile | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/Makefile b/Makefile index b57daba..071f7fc 100644 --- a/Makefile +++ b/Makefile @@ -14,18 +14,20 @@ CamlPaml: cd lib/CamlPaml; $(MAKE) $(MFLAGS) reinstall cde-package: PhyloCSF CDE + rm -rf cde-package cde-package.$(ARCH) CDE/cde ./PhyloCSF.$(ARCH) 12flies PhyloCSF_Examples/tal-AA.fa - CDE/cde ./PhyloCSF.$(ARCH) 29mammals PhyloCSF_Examples/ALDH2.exon5.fa --frames=3 - #CDE/cde ./PhyloCSF.$(ARCH) 29mammals PhyloCSF_Examples/Aldh2.mRNA.fa --frames=3 --removeRefGaps --aa + CDE/cde ./PhyloCSF.$(ARCH) 29mammals PhyloCSF_Examples/ALDH2.exon5.fa --frames=3 --allScores + CDE/cde ./PhyloCSF.$(ARCH) 29mammals PhyloCSF_Examples/Aldh2.mRNA.fa --strategy=fixed --frames=3 --orf=ATGStop --minCodons=400 --allScores --removeRefGaps --aa mv cde-package cde-package.$(ARCH) tar -cf cde-package.$(ARCH).tar cde-package.$(ARCH) CDE: - cd CDE && make + git submodule update --init + cd CDE && $(MAKE) clean: cd lib/CamlPaml; $(MAKE) clean cd src; $(MAKE) clean rm -f PhyloCSF.* rm -rf cde-package* - cd CDE && make clean || true \ No newline at end of file + cd CDE && $(MAKE) clean || true \ No newline at end of file