/PhyloCSF

History for PhyloCSF/PhyloCSF
Commits on Mar 19, 2013

  1. Add dispatch script to set PHYLOCSF_BASE

    committed Mar 19, 2013
    0cfd7b8
Commits on Sep 3, 2010

  1. reorganize directories and clean up build infrastructure

    committed Sep 3, 2010
    b12e634
Commits on Aug 31, 2010

  1. performance improvement: --species

    committed Aug 31, 2010
    48a5bb0

  2. performance optimization: workspace reuse

    committed Aug 31, 2010
    2053832

  3. CamlPaml: stripped out intrinsic support for fixed-effect likelihood … 

    …models with multiple components, simplifying the interfaces
    committed Aug 31, 2010
    196aaa3
Commits on Aug 27, 2010

  1. rework of CamlPaml.Infer to use GSL matrices and BLAS

    Michael Lin committed Aug 27, 2010
    5c6ba27

  2. minor bugfix to --orf=StopStop mode

    Michael Lin committed Aug 27, 2010
    0e5dd98
Commits on Aug 25, 2010

  1. new options for input (gap handling) and output (DNA/AA sequences); A… 

    …ldh2 example
    Michael Lin committed Aug 25, 2010
    247096d
Commits on Aug 17, 2010

  1. require ungapped reference sequence; example alignments

    Michael Lin committed Aug 17, 2010
    1e2477d
Commits on Aug 13, 2010

  1. initial import

    Michael Lin committed Aug 13, 2010
    6f89ad0