/PhyloCSF

History for PhyloCSF/PhyloCSF_Parameters
Commits on Oct 3, 2016
  1. @iljungr

    Parameters for 100vertebrates (using 29mammal ECMs), 23flies, 49birds

    iljungr committed Oct 3, 2016
    193e581
Commits on Jan 13, 2016
  1. @iljungr

    Added parameters for 58mammals. Uses same matrices as 29 mammals but … 

    …tree for the 58 placental mammals subset of hg38.100way.commonNames.nh (two names were changed to remove special characters: Star-nosed_mole -> Star_nosed_mole; David's_myotis -> Davids_myotis).
    iljungr committed Jan 13, 2016
    97a4324
Commits on Aug 28, 2014
  1. @iljungr

    Added parameters for 21mosquitoes and 7yeast.

    iljungr committed Aug 28, 2014
    e8378da
Commits on Apr 12, 2012
  1. @iljungr

    Added 20flies parameter files. (Matrices are copied from 12flies, and… 

    … tree

is from modENCODE.)
    iljungr committed Apr 12, 2012
    1f40ece
Commits on Aug 17, 2010

  1. require ungapped reference sequence; example alignments

    Michael Lin committed Aug 17, 2010
    1e2477d