/PhyloCSF

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Commits on Oct 3, 2016
  1. @iljungr

    Parameters for 100vertebrates (using 29mammal ECMs), 23flies, 49birds

    iljungr committed Oct 3, 2016
    193e581
Commits on Jan 13, 2016
  1. @iljungr

    Added parameters for 58mammals. Uses same matrices as 29 mammals but … 

    …tree for the 58 placental mammals subset of hg38.100way.commonNames.nh (two names were changed to remove special characters: Star-nosed_mole -> Star_nosed_mole; David's_myotis -> Davids_myotis).
    iljungr committed Jan 13, 2016
    97a4324
Commits on Aug 28, 2014
  1. @iljungr

    Added parameters for 21mosquitoes and 7yeast.

    iljungr committed Aug 28, 2014
    e8378da
Commits on Apr 12, 2012
  1. @iljungr

    Merge branch 'master' of github.com:mlin/PhyloCSF

    iljungr committed Apr 12, 2012
    3b0bf5a
  2. @iljungr

    Added 20flies parameter files. (Matrices are copied from 12flies, and… 

    … tree

is from modENCODE.)
    iljungr committed Apr 12, 2012
    1f40ece
Commits on Jan 21, 2012
  1. @iljungr

    Initialize random number generator in find_init to make results repro… 

    …ducible.
    iljungr committed Jan 21, 2012
    829d1b1
Commits on Jan 19, 2012
  1. @iljungr

    Tiny cleanup in PhyloCSFModel.ml. 

    To Do: There is no longer any warning when it can't find
   a good branch length parameter. It would be good to add something
   to diagnostics in llr_MaxLik to indicate this.
    iljungr committed Jan 19, 2012
    5e18fc5
  2. @iljungr

    Removed Out_of_range errors. Instead, use end of range as branch leng… 

    …th factor.
    iljungr committed Jan 19, 2012
    86ae3ff