From 61c8a1e2367dae9dc4e1c762a090e1a10602f42d Mon Sep 17 00:00:00 2001 From: Markus Lux Date: Mon, 12 Feb 2018 09:14:16 +0100 Subject: [PATCH] use R 3.4 --- DESCRIPTION | 2 +- README.md | 8 ++------ 2 files changed, 3 insertions(+), 7 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 568a030..207901d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -6,7 +6,7 @@ Description: flowLearn is an R package for predicting flow cytometry gating thresholds based on only density information and (very) few manual expert gates provided. Depends: - R (>= 3.5) + R (>= 3.4) License: file LICENSE Encoding: UTF-8 LazyData: true diff --git a/README.md b/README.md index debda42..c4bf43f 100644 --- a/README.md +++ b/README.md @@ -24,10 +24,6 @@ iteratively improve the initial training. ## Using this software -- **IMPORTANT: To meet the requirements of Bioconductor, the minimum `R` version has been changed to - 3.5.** There, it is currently under review. However, flowLearn still works with the latest stable - version of `R` (3.4). You may change that in the `DESCRIPTION` file. - - FlowLearn is very well documented and provides a quick start vignette with some example data. - Clone the repository and build the `R` package using `devtools::install(build_vignettes = T)` @@ -37,9 +33,9 @@ iteratively improve the initial training. ## Files in the repository - `extra/eval.R` and `extra/eval.sh`: Scripts used for evaluating flowLearn on different data sets -- `extra/prepare_*` scripts: Converting raw FCS files into flowLearn's custom `DensityData` format +- `extra/prepare_*` scripts: Converting raw FCS files into flowLearn's custom `DensityData` format - `extra/comparisons/` Scripts for running and evaluating flowSOM and DeepCyTOF on the mice data set. ## Licensing -It is permitted to use flowLearn for non-commercial, i.e. academic or other scholarly research use. Please have a look at the LICENSE file for details. \ No newline at end of file +It is permitted to use flowLearn for non-commercial, i.e. academic or other scholarly research use. Please have a look at the LICENSE file for details.