Permalink
Browse files

Rephrasing

  • Loading branch information...
mmatschiner committed Aug 12, 2018
1 parent 58533ce commit bca21ed61270dfacfe0f645ca9ab513480278a11
Showing with 4 additions and 2 deletions.
  1. +4 −2 README.md
@@ -493,16 +493,18 @@ The TreeAnnotator window should then look as shown below.

After clicking "OK", TreeAnnotator will write the maximum-clade-credibility tree to file `Near_et_al_red.tre`. This tree can now be visualized with FigTree.

> Open file `Near_et_al_red.tre` in FigTree. To add a time scale, set a tick next to "Scale Axis" in the menu on the left, then click the triangle next to it. Remove the tick next to "Show grid" and set a tick next to "Reverse axis". To illustrate the uncertainty in divergence-time estimates, select "height_95%_HPD" from the drop-down menu in the "Node Bars" panel.
> Open file `Near_et_al_red.tre` in FigTree. To add a time scale, set a tick next to "Scale Axis" in the menu on the left, then click the triangle next to it. Remove the tick next to "Show grid" and set a tick next to "Reverse axis". Then, set a tick next to "Node bars", click the triangle to open this panel, and select "height_95%_HPD" from the drop-down menu to illustrate the uncertainty in divergence-time estimates.
The tree should then be shown as in the screenshot below.
<figure>
<a id="fig:figtree1"></a>
<img style="width:60%;" src="figures/figtree1.png" alt="FigTree">
<img style="width:80%;" src="figures/figtree1.png" alt="FigTree">
<figcaption>Figure 28: Visualizing the summary tree with FigTree.</figcaption>
</figure>
<br><br><br><br><br><br><br><br>

0 comments on commit bca21ed

Please sign in to comment.