Skip to content

Commit 5a862ab

Browse files
author
Digp
committed
Updated instructions
1 parent 996d3ac commit 5a862ab

File tree

1 file changed

+12
-4
lines changed

1 file changed

+12
-4
lines changed

README.md

Lines changed: 12 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -14,16 +14,24 @@ Instructions for Unix systems
1414

1515
install.packages(c("bio3d", "circlize", "jsonlite", "plot3D", "MASS", "RColorBrewer", "RANN"))
1616

17-
2- Download veriNA3d from GitLab. It will download a compressed .zip file with two versions of the package:
17+
2- Download veriNA3d from GitLab ("http://mmb.irbbarcelona.org/gitlab/dgallego/veriNA3d/repository/archive.zip?ref=master").
18+
The zip file contains two equivalent versions of the package:
19+
1820
A- veriNA3d_R-3.5.tar.gz
21+
1922
B- veriNA3d_R-3.4.tar.gz
2023

21-
Option A is the recommended one, since it dramatically speeds up the cifParser function. However, Option B offers the package for R >= 3.4, since R-3.5 might be difficult to install for some unix users.
24+
The whole package has been developed and tested in R-3.5, which makes it the recommended option. Furthermore, using R-3.5 speeds up the cifParser function, which has a dramatic effect when working with large mmCIF files.
25+
26+
3- Unzip the file and copy-paste the desired version of the package in your working directory.
2227

23-
3- Open R and run:
28+
4- Open R and run:
2429
 
2530

26-
install.packages(veriNA3d_R-3.5.tar.gz, repos = NULL, type="source")
31+
install.packages("veriNA3d_R-3.5.tar.gz", repos = NULL, type="source")
32+
33+
5- If desired, remove the unnecessary .tar.gz files and the .zip file.
34+
2735

2836
## Documentation
2937
----------------

0 commit comments

Comments
 (0)