Supplementary scripts for the paper "Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models"

by Mollinari and Garcia (2019) - DOI: 10.1534/g3.119.400378 - available here

Before performing analysis and simulations, please install:

• MAPpoly, available here
• PedigreeSim, available here
• polymapR, available here

R scripts:

• Auxiliary functions for Supporting Information 3
• Example in Supporting Information 3
• R script for Simulation 1
• R script for Simulation 2
• R script for Building SolCAP map
• Phased SolCAP denovo map
• R script for comparison study