diff --git a/docs/examples/quickstart.py b/docs/examples/quickstart.py
index b2c707fd..36b09c24 100644
--- a/docs/examples/quickstart.py
+++ b/docs/examples/quickstart.py
@@ -30,6 +30,8 @@
     save_budget={"*": "all"},
 )
 
+sim.run(verbose=True)
+
 # check CHD
 assert chd.data["head"][0, 0] == 1.0
 assert chd.data.head.sel(per=0)[99] == 0.0
diff --git a/flopy4/mf6/component.py b/flopy4/mf6/component.py
index d4b55972..5c587cb0 100644
--- a/flopy4/mf6/component.py
+++ b/flopy4/mf6/component.py
@@ -13,30 +13,22 @@ class Component(ABC, MutableMapping):
     def __attrs_init_subclass__(cls):
         COMPONENTS[cls.__name__.lower()] = cls
 
-    def __attrs_post_init__(self):
-        self._where = type(self).__xattree__["where"]
-
     def __getitem__(self, key):
-        data = getattr(self, self._where)
-        return data.children[key]
+        return self.children[key]  # type: ignore
 
     def __setitem__(self, key, value):
-        data = getattr(self, self._where)
-        if key in data.children:
-            data.update({key: value})
-        else:
-            data = data.assign({key: value})
-        setattr(self, self._where, data)
+        self.children[key] = value  # type: ignore
 
     def __delitem__(self, key):
-        data = getattr(self, self._where)
-        data = data.drop_nodes(key)
-        setattr(self, self._where, data)
+        del self.children[key]  # type: ignore
 
     def __iter__(self):
-        data = getattr(self, self._where)
-        return iter(data.children)
+        return iter(self.children)  # type: ignore
 
     def __len__(self):
-        data = getattr(self, self._where)
-        return len(data.children)
+        return len(self.children)  # type: ignore
+
+    def write(self) -> None:
+        # TODO: write with jinja to file
+        for child in self.children.values():  # type: ignore
+            child.write()
diff --git a/flopy4/mf6/simulation.py b/flopy4/mf6/simulation.py
index 66e289ef..8b1bf705 100644
--- a/flopy4/mf6/simulation.py
+++ b/flopy4/mf6/simulation.py
@@ -1,6 +1,8 @@
+from os import PathLike
 from pathlib import Path
 
 from flopy.discretization.modeltime import ModelTime
+from modflow_devtools.misc import run_cmd, set_dir
 from xattree import field, xattree
 
 from flopy4.mf6.component import Component
@@ -31,3 +33,15 @@ class Simulation(Component):
     @property
     def time(self) -> ModelTime:
         return self.tdis.to_time()
+
+    def run(self, exe: str | PathLike = "mf6", verbose: bool = False) -> None:
+        """Run the simulation using the given executable."""
+        if self.path is None:
+            raise ValueError(f"Simulation {self.name} has no workspace path.")
+        with set_dir(self.path):
+            stdout, stderr, retcode = run_cmd(exe, verbose=verbose)
+            if retcode != 0:
+                raise RuntimeError(
+                    f"Simulation {self.name}: {exe} failed to run with returncode "  # type: ignore
+                    f"{retcode}, and error message:\n\n{stdout + stderr} "
+                )
diff --git a/pixi.lock b/pixi.lock
index 0208d0a3..4e91da90 100644
--- a/pixi.lock
+++ b/pixi.lock
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+      - pypi: git+https://github.com/MODFLOW-USGS/modflow-devtools.git#134fb4c91cfa2382c014114ff292a05fa0305a2b
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-- pypi: git+https://github.com/MODFLOW-USGS/modflow-devtools.git#bf103be4926647027bd8b7d3ba86b7753c983b6b
+- pypi: git+https://github.com/MODFLOW-USGS/modflow-devtools.git#134fb4c91cfa2382c014114ff292a05fa0305a2b
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   version: 1.7.0.dev0
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@@ -9374,10 +9374,10 @@ packages:
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   - sparse[docs,mlir,notebooks,tox] ; extra == 'all'
   - matrepr ; extra == 'all'
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diff --git a/test/test_component.py b/test/test_component.py
index 4f7ef840..89b65d38 100644
--- a/test/test_component.py
+++ b/test/test_component.py
@@ -228,7 +228,6 @@ def test_init_big_sim():
     )
 
     # test dictionary access/deletion
-    assert gwf.get("npf")
-    assert gwf["npf"].attrs["host"] is npf
+    assert gwf["npf"] is npf
     del gwf["npf"]
-    assert not gwf.get("npf")
+    assert "npf" not in gwf
diff --git a/uv.lock b/uv.lock
index 3c5206cd..6e1382e3 100644
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