From 9ef014c4ac44e521e96cd94780e714ebb4f1b051 Mon Sep 17 00:00:00 2001 From: wpbonelli Date: Thu, 19 Jun 2025 22:03:24 -0400 Subject: [PATCH 1/2] update xattree version, update xatspec usage --- flopy4/mf6/adapters.py | 2 +- flopy4/mf6/codec/converter.py | 2 +- pixi.lock | 822 +++++++++++++++++----------------- uv.lock | 487 ++++++++++---------- 4 files changed, 640 insertions(+), 673 deletions(-) diff --git a/flopy4/mf6/adapters.py b/flopy4/mf6/adapters.py index 86019861..913c1726 100644 --- a/flopy4/mf6/adapters.py +++ b/flopy4/mf6/adapters.py @@ -185,7 +185,7 @@ def __init__( self._data = package.data else: raise Exception("Input package has no data") - self._spec = get_xatspec(type(package)) + self._spec = get_xatspec(type(package)).flat if modelgrid: self._grid = modelgrid elif model: diff --git a/flopy4/mf6/codec/converter.py b/flopy4/mf6/codec/converter.py index f3077c09..8a0a70c8 100644 --- a/flopy4/mf6/codec/converter.py +++ b/flopy4/mf6/codec/converter.py @@ -29,7 +29,7 @@ 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= "https://github.com/modflowpy/xattree.git#ad879c2dabb34e32d256d0f3d006678a654fb057" } dependencies = [ { name = "attrs" }, { name = "cattrs" }, From c6e65dd0c83fa6315e5429cef0c8ab0f3f10184c Mon Sep 17 00:00:00 2001 From: wpbonelli Date: Thu, 19 Jun 2025 22:48:07 -0400 Subject: [PATCH 2/2] update xattree and accommodate recent changes - use builtin dict to array converter, remove custom impl (todo: support tabular data too) - get rid of star syntax for sparse dict representations of arrays. this was more trouble than it was worth to generalize - miscelleanous other cleanup and notes --- docs/dev/sdd.md | 2 +- docs/examples/quickstart.py | 6 +-- flopy4/mf6/codec/__init__.py | 2 - flopy4/mf6/codec/converter.py | 81 +---------------------------------- flopy4/mf6/gwf/chd.py | 40 +++++++++++------ flopy4/mf6/gwf/dis.py | 27 ++++++------ flopy4/mf6/gwf/ic.py | 8 ++-- flopy4/mf6/gwf/npf.py | 35 ++++++++------- flopy4/mf6/gwf/oc.py | 72 +++---------------------------- flopy4/mf6/spec.py | 2 + flopy4/mf6/tdis.py | 22 ++++------ flopy4/spec.py | 2 + test/test_codec.py | 4 +- test/test_component.py | 54 +++++++++++++++-------- test/test_interface.py | 8 ++-- 15 files changed, 129 insertions(+), 236 deletions(-) diff --git a/docs/dev/sdd.md b/docs/dev/sdd.md index 1f74a786..dad56913 100644 --- a/docs/dev/sdd.md +++ b/docs/dev/sdd.md @@ -85,7 +85,7 @@ import numpy as np @define class Ic(Package): """Initial conditions package""" - strt: NDArray[np.floating] = field(...) + strt: NDArray[np.float64] = field(...) export_array_ascii: bool = field(...) export_array_netcdf: bool = field(...) ``` diff --git a/docs/examples/quickstart.py b/docs/examples/quickstart.py index cba8044e..3277c9c4 100644 --- a/docs/examples/quickstart.py +++ b/docs/examples/quickstart.py @@ -20,14 +20,14 @@ npf = Npf(parent=gwf, save_specific_discharge=True) chd = Chd( parent=gwf, - head={"*": {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}, + head={0: {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}, ) oc = Oc( parent=gwf, budget_file=f"{gwf.name}.bud", head_file=f"{gwf.name}.hds", - save_head={"*": "all"}, - save_budget={"*": "all"}, + save_head={0: "all"}, + save_budget={0: "all"}, ) # sim.write() diff --git a/flopy4/mf6/codec/__init__.py b/flopy4/mf6/codec/__init__.py index 518ff0b7..74f9c15c 100644 --- a/flopy4/mf6/codec/__init__.py +++ b/flopy4/mf6/codec/__init__.py @@ -9,7 +9,6 @@ from flopy4.mf6 import filters from flopy4.mf6.codec.converter import ( - structure_array, unstructure_array, unstructure_chd, unstructure_component, @@ -85,7 +84,6 @@ def dump(data, path: str | PathLike) -> None: __all__ = [ - "structure_array", "unstructure_array", "loads", "load", diff --git a/flopy4/mf6/codec/converter.py b/flopy4/mf6/codec/converter.py index 8a0a70c8..acf3c45e 100644 --- a/flopy4/mf6/codec/converter.py +++ b/flopy4/mf6/codec/converter.py @@ -1,93 +1,16 @@ -from typing import Any, Tuple +from typing import Any import numpy as np import sparse import xattree -from numpy.typing import NDArray from xarray import DataArray -from xattree import get_xatspec -from flopy4.adapters import get_cellid, get_nn +from flopy4.adapters import get_cellid from flopy4.mf6.component import Component -from flopy4.mf6.config import SPARSE_THRESHOLD from flopy4.mf6.constants import FILL_DNODATA from flopy4.mf6.spec import get_blocks, is_list_field -# TODO: convert to a cattrs structuring hook so we don't have to -# apply separately to all array fields? -def structure_array(value, self_, field) -> NDArray: - """ - Convert a sparse dictionary representation of an array to a - dense numpy array or a sparse COO array. - """ - - if not isinstance(value, dict): - # if not a dict, assume it's a numpy array - # and let xarray deal with it if it isn't - return value - - # get spec - spec = get_xatspec(type(self_)) - field = spec.flat[field.name] - if not field.dims: - raise ValueError(f"Field {field} missing dims") - - # resolve dims - explicit_dims = self_.__dict__.get("dims", {}) - inherited_dims = dict(self_.parent.data.dims) if self_.parent else {} - dims = inherited_dims | explicit_dims - shape = [dims.get(d, d) for d in field.dims] - unresolved = [d for d in shape if isinstance(d, str)] - if any(unresolved): - raise ValueError(f"Couldn't resolve dims: {unresolved}") - - if np.prod(shape) > SPARSE_THRESHOLD: - a: dict[Tuple[Any, ...], Any] = dict() - - def set_(arr, val, *ind): - arr[tuple(ind)] = val - - def final(arr): - coords = np.array(list(map(list, zip(*arr.keys())))) - return sparse.COO( - coords, - list(arr.values()), - shape=shape, - fill_value=field.default or FILL_DNODATA, - ) - else: - a = np.full(shape, FILL_DNODATA, dtype=field.dtype) # type: ignore - - def set_(arr, val, *ind): - arr[ind] = val - - def final(arr): - arr[arr == FILL_DNODATA] = field.default or FILL_DNODATA - return arr - - # populate array. TODO: is there a way to do this - # without hardcoding awareness of kper and cellid? - if "nper" in dims: - for kper, period in value.items(): - if kper == "*": - kper = 0 - match len(shape): - case 1: - set_(a, period, kper) - case _: - for cellid, v in period.items(): - nn = get_nn(cellid, **dims) - set_(a, v, kper, nn) - if kper == "*": - break - else: - for cellid, v in value.items(): - nn = get_nn(cellid, **dims) - set_(a, v, nn) - return final(a) - - def unstructure_array(value: DataArray) -> dict: """ Convert a dense numpy array or a sparse COO array to a sparse diff --git a/flopy4/mf6/gwf/chd.py b/flopy4/mf6/gwf/chd.py index d61a4307..f9013aa2 100644 --- a/flopy4/mf6/gwf/chd.py +++ b/flopy4/mf6/gwf/chd.py @@ -2,11 +2,10 @@ from typing import ClassVar, Optional import numpy as np -from attrs import Converter, define +from attrs import define from numpy.typing import NDArray -from xattree import xattree +from xattree import dict_to_array_converter, xattree -from flopy4.mf6.codec import structure_array from flopy4.mf6.constants import FILL_DNODATA from flopy4.mf6.package import Package from flopy4.mf6.spec import array, field @@ -34,24 +33,24 @@ class Steps: obs_filerecord: Optional[Path] = field(block="options", default=None) dev_no_newton: bool = field(default=False, metadata={"block": "options"}) maxbound: Optional[int] = field(block="dimensions", default=None) - head: Optional[NDArray[np.floating]] = array( + head: Optional[NDArray[np.float64]] = array( block="period", dims=( "nper", "nnodes", ), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) - aux: Optional[NDArray[np.floating]] = array( + aux: Optional[NDArray[np.float64]] = array( block="period", dims=( "nper", "nnodes", ), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) boundname: Optional[NDArray[np.str_]] = array( @@ -61,7 +60,7 @@ class Steps: "nnodes", ), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) steps: Optional[NDArray[np.object_]] = array( @@ -69,7 +68,7 @@ class Steps: block="period", dims=("nper", "nnodes"), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) @@ -79,8 +78,25 @@ def __attrs_post_init__(self): # in post init. but this only works when values # are set in the initializer, not when they are # set later. - maxhead = len(np.where(self.head != FILL_DNODATA)) if self.head is not None else 0 - maxaux = len(np.where(self.aux != FILL_DNODATA)) if self.aux is not None else 0 - maxboundname = len(np.where(self.boundname != "")) if self.boundname is not None else 0 + if self.head is None: + maxhead = 0 + else: + head = self.head if self.head.data.shape == self.head.shape else self.head.todense() + maxhead = len(np.where(head != FILL_DNODATA)) + if self.aux is None: + maxaux = 0 + else: + aux = self.aux if self.aux.data.shape == self.aux.shape else self.aux.todense() + maxaux = len(np.where(aux != FILL_DNODATA)) + if self.boundname is None: + maxboundname = 0 + else: + boundname = ( + self.boundname + if self.boundname.data.shape == self.boundname.shape + else self.boundname.todense() + ) + maxboundname = len(np.where(boundname != "")) + # maxsteps = len(np.where(self.steps != None)) if self.steps is not None else 0 self.maxbound = max(maxhead, maxaux, maxboundname) diff --git a/flopy4/mf6/gwf/dis.py b/flopy4/mf6/gwf/dis.py index 2580f940..a697b7b0 100644 --- a/flopy4/mf6/gwf/dis.py +++ b/flopy4/mf6/gwf/dis.py @@ -1,10 +1,8 @@ import numpy as np -from attrs import Converter from flopy.discretization.structuredgrid import StructuredGrid from numpy.typing import NDArray -from xattree import xattree +from xattree import dict_to_array_converter, xattree -from flopy4.mf6.codec import structure_array from flopy4.mf6.package import Package from flopy4.mf6.spec import array, dim, field @@ -25,48 +23,51 @@ class Dis(Package): coord="lay", scope="gwf", default=1, + group="grid", ) ncol: int = dim( block="dimensions", coord="col", scope="gwf", default=2, + group="grid", ) nrow: int = dim( block="dimensions", coord="row", scope="gwf", default=2, + group="grid", ) - delr: NDArray[np.floating] = array( + delr: NDArray[np.float64] = array( block="griddata", default=1.0, dims=("ncol",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - delc: NDArray[np.floating] = array( + delc: NDArray[np.float64] = array( block="griddata", default=1.0, dims=("nrow",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - top: NDArray[np.floating] = array( + top: NDArray[np.float64] = array( block="griddata", default=1.0, dims=("nrow", "ncol"), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - botm: NDArray[np.floating] = array( + botm: NDArray[np.float64] = array( block="griddata", default=0.0, dims=("nlay", "nrow", "ncol"), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - idomain: NDArray[np.integer] = array( + idomain: NDArray[np.int32] = array( block="griddata", default=1, dims=("nlay", "nrow", "ncol"), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) nnodes: int = dim( coord="node", diff --git a/flopy4/mf6/gwf/ic.py b/flopy4/mf6/gwf/ic.py index 96cc58b8..30ff006e 100644 --- a/flopy4/mf6/gwf/ic.py +++ b/flopy4/mf6/gwf/ic.py @@ -1,20 +1,18 @@ import numpy as np -from attrs import Converter from numpy.typing import NDArray -from xattree import xattree +from xattree import dict_to_array_converter, xattree -from flopy4.mf6.codec import structure_array from flopy4.mf6.package import Package from flopy4.mf6.spec import array, field @xattree class Ic(Package): - strt: NDArray[np.floating] = array( + strt: NDArray[np.float64] = array( block="packagedata", dims=("nnodes",), default=1.0, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) export_array_ascii: bool = field(block="options", default=False) export_array_netcdf: bool = field(block="options", default=False) diff --git a/flopy4/mf6/gwf/npf.py b/flopy4/mf6/gwf/npf.py index 4d8ea596..f8562b53 100644 --- a/flopy4/mf6/gwf/npf.py +++ b/flopy4/mf6/gwf/npf.py @@ -2,11 +2,10 @@ from typing import Optional import numpy as np -from attrs import Converter, define +from attrs import define from numpy.typing import NDArray -from xattree import xattree +from xattree import dict_to_array_converter, xattree -from flopy4.mf6.codec import structure_array from flopy4.mf6.package import Package from flopy4.mf6.spec import array, field @@ -51,47 +50,47 @@ class Xt3dOptions: block="griddata", dims=("nnodes",), default=0, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - k: NDArray[np.floating] = array( + k: NDArray[np.float64] = array( block="griddata", dims=("nnodes",), default=1.0, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - k22: Optional[NDArray[np.floating]] = array( + k22: Optional[NDArray[np.float64]] = array( block="griddata", dims=("nnodes",), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - k33: Optional[NDArray[np.floating]] = array( + k33: Optional[NDArray[np.float64]] = array( block="griddata", dims=("nnodes",), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - angle1: Optional[NDArray[np.floating]] = array( + angle1: Optional[NDArray[np.float64]] = array( block="griddata", dims=("nnodes",), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - angle2: Optional[NDArray[np.floating]] = array( + angle2: Optional[NDArray[np.float64]] = array( block="griddata", dims=("nnodes",), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - angle3: Optional[NDArray[np.floating]] = array( + angle3: Optional[NDArray[np.float64]] = array( block="griddata", dims=("nnodes",), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) - wetdry: Optional[NDArray[np.floating]] = array( + wetdry: Optional[NDArray[np.float64]] = array( block="griddata", dims=("nnodes",), default=None, - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, ) diff --git a/flopy4/mf6/gwf/oc.py b/flopy4/mf6/gwf/oc.py index 6bcae76a..3276212d 100644 --- a/flopy4/mf6/gwf/oc.py +++ b/flopy4/mf6/gwf/oc.py @@ -2,74 +2,14 @@ from typing import Literal, Optional import numpy as np -from attrs import Converter, define -from modflow_devtools.dfn import Field +from attrs import define from numpy.typing import NDArray -from xattree import xattree +from xattree import dict_to_array_converter, xattree -from flopy4.mf6.codec import structure_array from flopy4.mf6.package import Package from flopy4.mf6.spec import array, field from flopy4.utils import to_path -_OCSETTING = Field( - name="ocsetting", - type="keystring", - reader="urword", - children={ - "all": Field( - name="all", - type="keyword", - reader="urword", - ), - "first": Field( - name="first", - type="keyword", - reader="urword", - ), - "last": Field( - name="last", - type="keyword", - reader="urword", - ), - "steps": Field( - name="steps", - type="integer", - reader="urword", - ), - "frequency": Field( - name="frequency", - type="integer", - reader="urword", - ), - }, -) - -_RTYPE = Field( - name="rtype", - type="string", - reader="urword", -) - - -def _oc_action_field(action: str) -> Field: - return Field( - name=f"{action}record", - type="recarray", - dims=("nper",), - block="perioddata", - reader="urword", - children={ - action: Field( - name=action, - type="keyword", - reader="urword", - ), - "rtype": _RTYPE, - "ocsetting": _OCSETTING, - }, - ) - @xattree class Oc(Package): @@ -114,7 +54,7 @@ class Period: block="period", default="all", dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) save_budget: Optional[NDArray[np.object_]] = array( @@ -122,7 +62,7 @@ class Period: block="period", default="all", dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) print_head: Optional[NDArray[np.object_]] = array( @@ -130,7 +70,7 @@ class Period: block="period", default="all", dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) print_budget: Optional[NDArray[np.object_]] = array( @@ -138,7 +78,7 @@ class Period: block="period", default="all", dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) diff --git a/flopy4/mf6/spec.py b/flopy4/mf6/spec.py index 79cb9d1f..73840871 100644 --- a/flopy4/mf6/spec.py +++ b/flopy4/mf6/spec.py @@ -54,6 +54,7 @@ def dim( eq=True, init=True, metadata=None, + group=None, block: str | None = None, ): """Define a dimension field.""" @@ -69,6 +70,7 @@ def dim( eq=eq, init=init, metadata=metadata, + group=group, ) diff --git a/flopy4/mf6/tdis.py b/flopy4/mf6/tdis.py index 79e8396b..7a1428bd 100644 --- a/flopy4/mf6/tdis.py +++ b/flopy4/mf6/tdis.py @@ -2,12 +2,11 @@ from typing import Optional import numpy as np -from attrs import Converter, define +from attrs import define from flopy.discretization.modeltime import ModelTime from numpy.typing import NDArray -from xattree import ROOT, xattree +from xattree import ROOT, dict_to_array_converter, xattree -from flopy4.mf6.codec import structure_array from flopy4.mf6.package import Package from flopy4.mf6.spec import array, dim, field @@ -20,33 +19,28 @@ class PeriodData: nstp: int tsmult: float - nper: int = dim( - block="dimensions", - coord="per", - default=1, - scope=ROOT, - ) + nper: int = dim(block="dimensions", coord="per", default=1, scope=ROOT, group="time") time_units: Optional[str] = field(block="options", default=None) start_date_time: Optional[datetime] = field(block="options", default=None) - perlen: NDArray[np.floating] = array( + perlen: NDArray[np.float64] = array( block="perioddata", default=1.0, dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) nstp: NDArray[np.integer] = array( block="perioddata", default=1, dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) - tsmult: NDArray[np.floating] = array( + tsmult: NDArray[np.float64] = array( block="perioddata", default=1.0, dims=("nper",), - converter=Converter(structure_array, takes_self=True, takes_field=True), + converter=dict_to_array_converter, reader="urword", ) diff --git a/flopy4/spec.py b/flopy4/spec.py index f9fd37d4..31f2f537 100644 --- a/flopy4/spec.py +++ b/flopy4/spec.py @@ -40,6 +40,7 @@ def dim( eq=True, init=True, metadata=None, + group=None, ): """Define a dimension field.""" return xattree_dim( @@ -50,6 +51,7 @@ def dim( eq=eq, init=init, metadata=metadata, + group=group, ) diff --git a/test/test_codec.py b/test/test_codec.py index 427b18ff..dfa986da 100644 --- a/test/test_codec.py +++ b/test/test_codec.py @@ -23,8 +23,8 @@ def test_dumps_oc(): oc = Oc( budget_file="test.bud", head_file="test.hds", - save_head={"*": "all"}, - save_budget={"*": "all"}, + save_head={0: "all"}, + save_budget={0: "all"}, dims={"nper": 1}, ) diff --git a/test/test_component.py b/test/test_component.py index 80792f8d..20b080b0 100644 --- a/test/test_component.py +++ b/test/test_component.py @@ -6,9 +6,9 @@ from flopy.discretization.modeltime import ModelTime from modflow_devtools.dfn import Sln from xarray import DataTree +from xattree import sparse_config from flopy4.mf6.component import COMPONENTS -from flopy4.mf6.constants import FILL_DNODATA from flopy4.mf6.gwf import Chd, Dis, Gwf, Ic, Npf, Oc from flopy4.mf6.ims import Ims from flopy4.mf6.simulation import Simulation @@ -168,7 +168,22 @@ def test_init_sim_explicit_dims(): ic = Ic(dims=dims) oc = Oc(dims=dims) npf = Npf(dims=dims) - chd = Chd(dims=dims, head={"*": {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}) + # TODO: wrap xattree dict_to_array_converter + # to handle arrays which declare only dims + # nper and nnodes intelligently based on the + # type of discretization the model has. the + # dim_groups feature is not sufficient for + # this, since it expects arrays to declare + # the dimensions they will be indexed with, + # but in mf6 dfns an array that'd we really + # know is grid-shaped is defined with dims + # nper and nnodes, regardless of grid type. + # (dim_groups seems like a dumb idea anyway, + # in retrospect, reinventing some of what an + # xarray index is/does. it should be removed + # from xattree. a component index, if provided, + # should be inspected for linked coordinates??) + chd = Chd(dims=dims, head={0: {0: 1.0, 99: 0.0}}) gwf = Gwf( dis=dis, ic=ic, @@ -194,24 +209,26 @@ def test_init_sim_explicit_dims(): assert np.array_equal(sim.models["gwf"].npf.data.k, np.ones(100)) assert chd.head[0, 0] == 1.0 assert chd.head[0, 99] == 0.0 - assert np.array_equal(chd.head[0, 1:99].data, np.full((98,), FILL_DNODATA)) - assert np.array_equal(chd.head.data, chd.data.head.data) + assert np.array_equal(chd.head[0, 1:99].data, np.full((98,), np.nan), equal_nan=True) + assert np.array_equal(chd.head.data, chd.data.head.data, equal_nan=True) assert np.array_equal( chd.head.data, sim.models["gwf"].chd[0].data.head.data, + equal_nan=True, ) def test_init_big_sim(): # if size over threshold, arrays should be sparse - time = ModelTime(perlen=[1.0], nstp=[1], tsmult=[1.0]) - grid = StructuredGrid(nlay=1, nrow=100, ncol=100) - sim = Simulation(tdis=time) - gwf = Gwf(parent=sim, dis=grid) - ic = Ic(parent=gwf) - oc = Oc(parent=gwf) - npf = Npf(parent=gwf) - chd = Chd(parent=gwf, head={"*": {(0, 0, 0): 1.0, (0, 99, 99): 0.0}}) + with sparse_config(threshold=1000): + time = ModelTime(perlen=[1.0], nstp=[1], tsmult=[1.0]) + grid = StructuredGrid(nlay=1, nrow=100, ncol=100) + sim = Simulation(tdis=time) + gwf = Gwf(parent=sim, dis=grid) + ic = Ic(parent=gwf) + oc = Oc(parent=gwf) + npf = Npf(parent=gwf) + chd = Chd(parent=gwf, head={0: {0: 1.0, 9999: 0.0}}) assert sim.models["gwf"] is gwf assert isinstance(sim.data, DataTree) @@ -222,13 +239,16 @@ def test_init_big_sim(): assert gwf.chd[0] is chd assert np.array_equal(sim.models["gwf"].npf.k, np.ones(10000)) assert np.array_equal(sim.models["gwf"].npf.data.k, np.ones(10000)) - assert chd.head[0, 0] == 1.0 - assert chd.head[0, 9999] == 0.0 - assert np.array_equal(chd.head[0, 1:9999].data.todense(), np.full((9998,), FILL_DNODATA)) - assert np.array_equal(chd.head.data.todense(), chd.data.head.data.todense()) + assert chd.head[0, 0].item() == 1.0 + assert chd.head[0, 9999].item() == 0.0 + assert np.array_equal( + chd.head[0, 1:9999].data.todense(), np.full((9998,), np.nan), equal_nan=True + ) + assert np.array_equal(chd.head.data.todense(), chd.data.head.data.todense(), equal_nan=True) assert np.array_equal( chd.head.data.todense(), sim.models["gwf"].chd[0].data.head.data.todense(), + equal_nan=True, ) # test dictionary access/deletion @@ -282,7 +302,7 @@ def test_write_ascii(function_tmpdir): ic = Ic(parent=gwf) oc = Oc(parent=gwf) npf = Npf(parent=gwf) - chd = Chd(parent=gwf, head={"*": {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}) + chd = Chd(parent=gwf, head={0: {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}) sim.write() diff --git a/test/test_interface.py b/test/test_interface.py index 64dd0e7d..b1793f23 100644 --- a/test/test_interface.py +++ b/test/test_interface.py @@ -24,14 +24,14 @@ def quickstart_model(): npf = Npf(parent=gwf, save_specific_discharge=True) chd = Chd( parent=gwf, - head={"*": {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}, + head={0: {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}, ) oc = Oc( parent=gwf, budget_file=f"{name}.bud", head_file=f"{name}.hds", - save_head={"*": "all"}, - save_budget={"*": "all"}, + save_head={0: "all"}, + save_budget={0: "all"}, ) return gwf @@ -65,7 +65,7 @@ def test_flopy3_model(tmp_path): ic = Ic(dims=dims) oc = Oc(dims=dims) npf = Npf(dims=dims) - chd = Chd(dims=dims, head={"*": {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}) + chd = Chd(dims=dims, head={0: {(0, 0, 0): 1.0, (0, 9, 9): 0.0}}) gwf = Gwf( dis=dis,