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1. Movi Movi Public

   Fast and cache-efficient full-text pangenome index

   C++ 29 5

2. FM-Index FM-Index Public

   A data structure to query exact matches (for genomics sequences)

   C

3. BBHash BBHash Public

   A minimum perfect hash function

   C

4. COMBINE-lab/pufferfish COMBINE-lab/pufferfish Public

   An efficient index for the colored, compacted, de Bruijn graph

   C 111 22

5. alevin-fry alevin-fry Public

   Forked from COMBINE-lab/alevin-fry

   🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

   Rust

6. COMBINE-lab/salmon COMBINE-lab/salmon Public

   🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

   C++ 813 168