@RoanKanninga RoanKanninga released this Jun 30, 2016 · 1021 commits to master since this release

Assets 2
  • Writing coverage results to seperate folders (CoveragePerBase and CoveragePerTarget)
  • updated to GATK 3.5
  • removed dbNSFP and snpEff annotation (cannot work with the * vcf 4.1 annotation in case of deletion in alt)
  • removed old QC report scripts