@RoanKanninga RoanKanninga released this Oct 3, 2016 · 846 commits to master since this release

Assets 2

new Features

- XHMM - Convading - Manta - compressing g.vcf files

New workflows and generatescripts

- reanalysis - WGS reanalysis (including genotyping with old samples)

Differences:

- genotyping has compressed g.vcf file as input - upgrade to GATK 3.6 - updated CoverageCalculations (fixing bedfile format issue, that there were no gene names in the output)