@RoanKanninga RoanKanninga released this Jul 27, 2017 · 428 commits to master since this release

Assets 2
  • created trackNtrace header/footer + removal of cutadapt in PrepareFastQ
  • fix for not having a vcf index issue
  • removing EBROOTSAMBAMBA since it is added to the PATH
  • added gender check alarm when samplesheet says e.g. Male and calculated gender is Female
  • changing output in PrepareFastQ step since it has storage issues when deploying multiple big jobs
  • added M&M part to QCReport
  • added set -eu to first rocket
  • changed generate_template (it will now work with named arguments)